Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06080 552 / 0 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 534 / 0 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT5G06230 331 / 2e-110 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 322 / 2e-106 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 320 / 6e-105 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 312 / 1e-101 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G12060 309 / 1e-99 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 310 / 3e-99 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G48880 304 / 4e-99 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1) AT1G60790 300 / 4e-96 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034041 [exp] 690 / 0 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 563 / 0 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10028025 [exp] 461 / 7e-160 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10003734 [exp] 454 / 1e-157 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 334 / 4e-111 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 332 / 2e-110 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 326 / 4e-108 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 328 / 8e-108 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10013035 [exp] 322 / 1e-104 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203900 [exp] 607 / 0 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 532 / 0 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G074800 [exp] 330 / 9e-110 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G195800 [exp] 328 / 3e-107 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.010G043300 [exp] 315 / 3e-102 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 313 / 2e-100 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 309 / 7e-99 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 305 / 1e-98 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.T171301 [exp] 304 / 1e-98 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 303 / 2e-98 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10034039 pacid=23154811 polypeptide=Lus10034039 locus=Lus10034039.g ID=Lus10034039.BGIv1.0 annot-version=v1.0 ATGGCGAAGGATAAGCCGCATGAAGAGCAAGAGATCATACATTCCTTGGATTTTTGCAACAAGTTGAAGAACCTAAGACTCTACGTACCATCCGTTGGGG TCTCAGGATTTTTTCTTGTCACACTCTGTTTGATTCTCTCTTTCTTTTACTTGGATTACAGGGAAGTTATTGGGAGAGTATACAAAGTTCCTACGAAATC TGAAGGGCTTATGCCAGTACAGTTTAGTAATAGCAGTTCGGTTGAGAAGGAAAGAGCCGATTTTTTGAAAAAAGGAGGGAACGGGTGCGATGTTTTTGAT GGGGAATGGGTTTGGGATGATGATTACCCTTTGTATCAGTCCAAGGATTGCAGCTTTATGGACAGAGGGTTTAAATGTAAAGAAAATGGGAGGCCTGATG TTTTCTACACCAAATGGAGATGGCAGCCGAAGCAATGTAATTTGCCCAGATTTGATGGGAAGTTGATGTTGGAGAAGCTGCGAAACAGACGGCTTGTGTT TGTTGGGGATTCGCTCGGGAGGAATCAATGGGAATCGATGTTGTGCATGCTGTCCTCTGCAGTTGCTAACAATGATTCAGTCTATGAAGTGAACGGGAAT CCAATTACAAAGCACCAGTTGTCATTGGTGTTCAAGTTCGAGGATTACAATTGCACTGTGGAGTATTACAGGTCTCCCTTTCTTGTGCCATTAGGCTTGC CTACTTCAGGGCCACTCCAGAAAGTTCGGTTAACGCTCAAGTTGGACAAAATGGATTGGACATCCGCGAAATGGAGAAATGCAGATGTGCTCGTCCTGAA TACAGGGCATTGGTGGAATTCTGGGAAGACAGTGAAAAGAGGAATTTTTTTCCAAGTTGGCAAAGAAGTAAAAATGGAGATGAGGGTTAAGGACGCTTAC GTTAAGTCTCTGGAGACGGTTATGCACTGGATTCAGAATGAAGTCAATTCAACAAAGACACAAGTCCTTTTTCGCACATATTCTCCTGCCCATTTCAGGG GAGGGAAGTGGAACACAGGAGGGAGCTGTCATAGGGAGACTCTGCCTGAGTTGGGGGCGGCATCATCAGAACAATGGGCACAATTCGAGATAGCGGCTGA TGTTCTGTCGAACCTTACAAAACAAGACAGGAGGGGATTCGAGTTTTTGAACATAACTGGGTTGACTGCTAGAAGGAAAGATGGACATATATCACTCTAC TATCCAAGGTCGAATACGCCCGGGCCATCGCCCACACAGGATTGCAGCCATTGGTGTCTTCCTGGAGTCCCTGATTCTTGGAACGAACTTGTGTATGCAT TGTTCCTTAAACGTGAATCTACTACCTTCCCTGCTGCATCTTATCCTTCATCTTCCAACAATGCACCAGTTTCATGA
AA sequence Show only first row Show all	>Lus10034039 pacid=23154811 polypeptide=Lus10034039 locus=Lus10034039.g ID=Lus10034039.BGIv1.0 annot-version=v1.0 MAKDKPHEEQEIIHSLDFCNKLKNLRLYVPSVGVSGFFLVTLCLILSFFYLDYREVIGRVYKVPTKSEGLMPVQFSNSSSVEKERADFLKKGGNGCDVFD GEWVWDDDYPLYQSKDCSFMDRGFKCKENGRPDVFYTKWRWQPKQCNLPRFDGKLMLEKLRNRRLVFVGDSLGRNQWESMLCMLSSAVANNDSVYEVNGN PITKHQLSLVFKFEDYNCTVEYYRSPFLVPLGLPTSGPLQKVRLTLKLDKMDWTSAKWRNADVLVLNTGHWWNSGKTVKRGIFFQVGKEVKMEMRVKDAY VKSLETVMHWIQNEVNSTKTQVLFRTYSPAHFRGGKWNTGGSCHRETLPELGAASSEQWAQFEIAADVLSNLTKQDRRGFEFLNITGLTARRKDGHISLY YPRSNTPGPSPTQDCSHWCLPGVPDSWNELVYALFLKRESTTFPAASYPSSSNNAPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	0	1
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	1.4	0.6872
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	5.1	0.6891
AT4G28020			unknown protein		Lus10008905 [exp]	6.5	0.6684
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10002938 [exp]	7.5	0.6650
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10037942 [exp]	26.7	0.6503
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	27.7	0.5960
AT5G07610			F-box family protein (.1)		Lus10042990 [exp]	39.5	0.5530
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	50.2	0.6167
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	56.8	0.6142
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	62.0	0.6166

Compare expression of checked genes

Lus10034039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.