Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19160 585 / 0 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 575 / 0 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 325 / 3e-108 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 324 / 3e-107 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G20590 316 / 3e-103 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 315 / 7e-103 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 316 / 3e-102 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 317 / 4e-102 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 314 / 9e-102 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G49340 298 / 2e-96 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034039 [exp] 679 / 0 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 613 / 0 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10003734 [exp] 468 / 3e-163 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 462 / 3e-160 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 326 / 1e-107 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10013035 [exp] 328 / 8e-107 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 325 / 4e-106 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10017004 [exp] 317 / 9e-105 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 317 / 1e-104 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203900 [exp] 661 / 0 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.002G054400 [exp] 549 / 0 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G074800 [exp] 325 / 1e-107 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G195800 [exp] 323 / 7e-105 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.T171301 [exp] 320 / 8e-105 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 320 / 1e-104 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 320 / 8e-104 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 312 / 2e-101 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 315 / 6e-101 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 310 / 1e-100 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10034041 pacid=23154853 polypeptide=Lus10034041 locus=Lus10034041.g ID=Lus10034041.BGIv1.0 annot-version=v1.0 ATGGCGAAGAATCCGCCGCAGGAAGAGCACGACACGACCATGCATTCCTGCGGTTTCTCCAACAAGTTGAAGCGCTTCAGGCTGTACGAGCCATCTGTTG GTGTTTTGGGGTTCTTTCTCGTCGCACTCTGCGTGATTCTCTGTTTCTTCTACTTGGATTACAGGCAAGTCATAGGGAGACTGTACAGAGTTCCTACGAA ATCGGAGAGGTTTATGTGGATACAGTTTGGTAATAGTAACGGCTCTATTGAAAAGCAAAGAGTTGATTTTTTGGAACAAGGAGGGAATGGGTGCAATGTT TTTGACGGGGACTGGGTTTGGGACGACGATTACCCTTTGTATCAGTCCAAAGATTGCAGCTTTTTGGATGAAGGATTTAGGTGTAAAGAGAATGGGAGGC CTGATTTGTTCTACACCAAATGGAGATGGCAGCCCAAGCAATGTAACTTACCCAGATTTGACGGGAAGTTGATATTGGAGAAGTTACGAAACAAGAGGGT TGTGTTTGCGGGGGATTCAATCGGGAGGAATCAATGGGAATCCATGTTATGTATGCTGTCATCTGTAGTTTCCGACAAGGATTCAGTCTATGAAGTGAAC GGGAGTCCGATCACAAAACACAAGGGATTTTTGGTGTTCAAGTTCAAGGATTACAATTGCACTGTGGAGTATTACAGGTCTCCATTCCTTGTGCTGCAAG GCAGGCCTCCTGCTGGGGCACCCCCGAAGGCTCGATTAACCCTTAAATTAGACAAAATGGATTGGAACTCGGCGAAATGGAGAAATGCAGATGTGCTTAT CCTGAATTCGGGTCATTGGTGGAATTACGAGAAGACTATAAGAGGGGGAACATACTTCCAAGTTGGCCGAAAACTTAAAACGGAGATGAGCGTTAAGGGT GCTTACCGGAGGTCCATGAAGACTGTGATGCGCTGGATAGATAATGAAGTCAATTCAACCAAGACACAAGTCTTCTTCCGGACATTTGCTCCTGTCCATT TCAGGGGGGGTAAATGGAATACAGGAGGGAACTGCCATAGGGAGTCATTGCCTGAATTGGGGACAGCATCTCTAGTGCCACCAGAAACCTGGATACAGTT TGAGGCAGCGATGGATGTTCTGTCGAATCGCAGAAAACAAGACATGAGGAGGAGGACATTTGATCTTCTGAACATAACTGGGATGACTGCTAGAAGGAAA GATGGGCATTCATCTCTGTACTACTTGAGCTCGCAGCCAGCGCCATTGCGAAAGCAGGATTGTAGCCATTGGTGTCTTCCTGGAGTCCCGGATTCATGGA ATGAACTTGTCTACGCATTGTTCCTTAAACGTGAAGCCACCTTGTCTGCTGCATATAACTTGTCGTATGAAGTTCCTGCTTCATGA
AA sequence Show only first row Show all	>Lus10034041 pacid=23154853 polypeptide=Lus10034041 locus=Lus10034041.g ID=Lus10034041.BGIv1.0 annot-version=v1.0 MAKNPPQEEHDTTMHSCGFSNKLKRFRLYEPSVGVLGFFLVALCVILCFFYLDYRQVIGRLYRVPTKSERFMWIQFGNSNGSIEKQRVDFLEQGGNGCNV FDGDWVWDDDYPLYQSKDCSFLDEGFRCKENGRPDLFYTKWRWQPKQCNLPRFDGKLILEKLRNKRVVFAGDSIGRNQWESMLCMLSSVVSDKDSVYEVN GSPITKHKGFLVFKFKDYNCTVEYYRSPFLVLQGRPPAGAPPKARLTLKLDKMDWNSAKWRNADVLILNSGHWWNYEKTIRGGTYFQVGRKLKTEMSVKG AYRRSMKTVMRWIDNEVNSTKTQVFFRTFAPVHFRGGKWNTGGNCHRESLPELGTASLVPPETWIQFEAAMDVLSNRRKQDMRRRTFDLLNITGMTARRK DGHSSLYYLSSQPAPLRKQDCSHWCLPGVPDSWNELVYALFLKREATLSAAYNLSYEVPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	0	1
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	1.4	0.8640
AT5G59350			unknown protein		Lus10023421 [exp]	2.0	0.8305
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	2.4	0.8686
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	4.2	0.8381
AT3G46450			SEC14 cytosolic factor family ...		Lus10040845 [exp]	8.8	0.7847
AT3G53380			Concanavalin A-like lectin pro...		Lus10026493 [exp]	15.2	0.8220
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	16.7	0.8145
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	17.5	0.7928
AT4G23740			Leucine-rich repeat protein ki...		Lus10032351 [exp]	17.9	0.8267
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Lus10001668 [exp]	22.6	0.7960

Compare expression of checked genes

Lus10034041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.