Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19180 666 / 0 ECR1 E1 C-terminal related 1 (.1) AT2G21470 152 / 3e-40 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 103 / 3e-23 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 87 / 6e-18 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 66 / 2e-11 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 50 / 2e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G45900 44 / 0.0003 ATAPG7, ATG7, APG7, ATATG7 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010507 [exp] 857 / 0 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10017479 [exp] 150 / 3e-39 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 132 / 4e-33 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10012507 [exp] 95 / 2e-20 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 84 / 8e-17 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 83 / 1e-16 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 77 / 6e-15 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 74 / 7e-14 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022666 [exp] 48 / 1e-05 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204000 [exp] 772 / 0 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 768 / 0 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.009G120200 [exp] 153 / 2e-40 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 150 / 1e-39 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.009G075800 [exp] 95 / 2e-20 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G280600 [exp] 94 / 3e-20 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 94 / 5e-20 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 72 / 2e-13 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 50 / 2e-06 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G055600 [exp] 44 / 0.0003 AT5G45900 986 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0063 [flax] [poplar] PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [flax] [poplar] PF08825 [flax] [poplar] E2_bind E2 binding domain
Representative CDS sequence Show only first row Show all	>Lus10034043 pacid=23154746 polypeptide=Lus10034043 locus=Lus10034043.g ID=Lus10034043.BGIv1.0 annot-version=v1.0 ATGGCGAACTCAGCTGTGCAACCGAGCCGATCAAGGGACCTCGATAAGCTCCTCCTCAGGCCTGGGAATCTCGTCGGCGAGAACTTCGAACCCGGTCAGC AGTTGAGAGACGATCTTCGGGAGTATGTTCGAATTTTAGTTGTGGGTGCGGGTGGATTGGGGTGTGAGTTGCTCAAGGACTTGGCCCTTTCCGGGTTCAA GAATCTTGAGGTTATCGACATGGACAGAATTGAGGTTACCAATCTCAATCGCCAGTTCCTTTTCAGGCTTCAAGATGTGGGTAAGCCAAAGGCAGAGGTT GCAGCCAAGCGTGTCATGGAAAGAGTTAGTGGGGTGAATATTGTGCCCCATTTTTGTCGAATTGAGGACAAAGAGATTGATTTTTATAGTGATTTCAGTA TTATTGTGCTTGGTCTTGATTCCATAGAGGCTAGAAGCTATATAAATGCTGTGGCATGTGGTTTTCTTGAGTACGACTCCGATGACAATCCTCGGGAAGA GACAATGAAACCTATTGTTGATGGTGGTACTGAAGGATTTAAGGGGCATGCCAGGGTTATTTTGCCAGGAACAACCCCATGCTTTGAGTGTACCATCTGG CTCTTTCCTCCTCAAGTCAAATTTCCTCTCTGCACTTTGGCAGAAACCCCTAGAACGGCTGCTCACTGTATTGAGTATGCTCATCTTATTAAGTGGGATG AAGCACATAGTGGAAAGTCTTTTGACCCAGATGAACCTGAGCATATGAAGTGGGTCTACGATGAGGCTGTGAAGAGGGCAGAACTTTTTGGCATTCAGGG CGTTACATATTCGCTTACACAGGGAGTTGTGAAGAATATCATACCTGCCATTGCTTCTACGAATGCAATTATATCAGCTGCATGTACGCTGGAAACATTG AAGCTTGCCTCCGGATGCAGCAAAACACTTTCGAACTATCTAACATACAATGGTGTGGAAGGTCTGCACATCAAAGTGACTGAATTTGAGAAGGACAAAG ATTGTCTTGTTTGTGGTCCGGGTGTTCTTATTGAGATGGACGCTTCAGTTACTCTACAAAAGTTCATTAATCTGCTTGAAGAGCATTCGGTACTTCGCTT GTCAAAGGCAAGTGTCACACACAGAGGGAAGAATTTATACATGCAAGCACCGCCAGTTCTGGAAGAGATGACCAGATCAAACCTAAGCTTACCACTCTAT GAGCTCATGGGTAAAGTTACCAAGGACATCGTGCATGTGACTGGCATGGCAACTAAGGATGATAAAAAGACCTCATGTCTGAGGAAATTGCGCATCCTTT TCAAGGGCGTTGATGCAGTTACAGATATGGACACTGCTGGCGGAGCATAA
AA sequence Show only first row Show all	>Lus10034043 pacid=23154746 polypeptide=Lus10034043 locus=Lus10034043.g ID=Lus10034043.BGIv1.0 annot-version=v1.0 MANSAVQPSRSRDLDKLLLRPGNLVGENFEPGQQLRDDLREYVRILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVTNLNRQFLFRLQDVGKPKAEV AAKRVMERVSGVNIVPHFCRIEDKEIDFYSDFSIIVLGLDSIEARSYINAVACGFLEYDSDDNPREETMKPIVDGGTEGFKGHARVILPGTTPCFECTIW LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEAHSGKSFDPDEPEHMKWVYDEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACTLETL KLASGCSKTLSNYLTYNGVEGLHIKVTEFEKDKDCLVCGPGVLIEMDASVTLQKFINLLEEHSVLRLSKASVTHRGKNLYMQAPPVLEEMTRSNLSLPLY ELMGKVTKDIVHVTGMATKDDKKTSCLRKLRILFKGVDAVTDMDTAGGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	0	1
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10016751 [exp]	1.4	0.8967
					Lus10011573 [exp]	2.4	0.8670
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	2.8	0.8793
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	4.0	0.8545
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	5.0	0.8508
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	6.9	0.8272
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	9.0	0.8362
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	9.5	0.8361
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	9.8	0.7993
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	10.0	0.8128

Compare expression of checked genes

Lus10034043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.