Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19190 75 / 4e-18 unknown protein AT3G06070 74 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010508 [exp] 172 / 9e-57 AT3G06070 94 / 1e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204100 [exp] 100 / 1e-28 AT3G06070 96 / 2e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034044 pacid=23154637 polypeptide=Lus10034044 locus=Lus10034044.g ID=Lus10034044.BGIv1.0 annot-version=v1.0 ATGGAGTTTGAAGATGATTTGCTCTTTGCAGACTTGAGCAAGCAGATTTCTCTTCTGATTATGGATGATGATGAGGAAGACCAAGTTGCTGTTTCCTCTT CAGTTTCCTTTCAGGCATACTCAATATCGAATTACCCAACAGCAGTACAATCTCCTTTCATGTATGAGCAGATCAGTTGCAGAAGGGAGAGCAAAGGGAC AGGTGTCTTCATCCCACAGTCATCACTTCCAAGGAGGAAGCAGAGGCAAGGCAGATACAGTAACTCAAAAGGCCAGAGAAAGCAGCAAGACAACAACAAC ACAAGAATGGTTTCTCAAGTATCTTACAGCAACTCCTATAGCACATCAAAGAAGGGCTAA
AA sequence Show only first row Show all	>Lus10034044 pacid=23154637 polypeptide=Lus10034044 locus=Lus10034044.g ID=Lus10034044.BGIv1.0 annot-version=v1.0 MEFEDDLLFADLSKQISLLIMDDDEEDQVAVSSSVSFQAYSISNYPTAVQSPFMYEQISCRRESKGTGVFIPQSSLPRRKQRQGRYSNSKGQRKQQDNNN TRMVSQVSYSNSYSTSKKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06070			unknown protein		Lus10034044 [exp]	0	1
AT5G23160			unknown protein		Lus10013437 [exp]	2.8	0.9527
AT3G06070			unknown protein		Lus10010508 [exp]	3.0	0.9287
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	3.3	0.9549
AT5G18030			SAUR-like auxin-responsive pro...		Lus10027317 [exp]	3.9	0.9517
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10014300 [exp]	6.7	0.9226
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	10.2	0.9250
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	11.3	0.9290
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009959 [exp]	11.5	0.9258
AT3G12620			Protein phosphatase 2C family ...		Lus10019893 [exp]	12.2	0.9004
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	13.0	0.9246

Compare expression of checked genes

Lus10034044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.