Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 80 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 79 / 7e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29300 40 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G30670 39 / 0.0002 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 38 / 0.0003 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29310 38 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 37 / 0.0004 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033745 [exp] 78 / 1e-18 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029937 [exp] 76 / 5e-18 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004471 [exp] 76 / 7e-18 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021931 [exp] 72 / 3e-16 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 45 / 2e-06 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 40 / 6e-05 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092400 [exp] 83 / 3e-21 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 76 / 4e-18 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G023900 [exp] 74 / 4e-17 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 48 / 1e-07 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 46 / 5e-07 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 45 / 8e-07 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034048 pacid=23154747 polypeptide=Lus10034048 locus=Lus10034048.g ID=Lus10034048.BGIv1.0 annot-version=v1.0 ATGCCCCCGGACAGCATTAAAACACTCGGATCATCGGTTCCGATGGGTAGGGCAGCACAGCCTCACGAGATCGCGCCATGTTATGTCTTCTTGGCCTGCA ACGAGTGTTCCTCTTACTTCACCGGCCAAGTTCTGCATCCTAATGGTAATTGCACCCCATTCGACCCTTTTGTGTGTGTTTATTTGTGTTTGGAAGTTTA TGCATTGTTTCTGAAATGGGGGATTCTGTGTGGTTGTTTGTCGATTGCAGGCGGAATGATAGTCAACGCCTGA
AA sequence Show only first row Show all	>Lus10034048 pacid=23154747 polypeptide=Lus10034048 locus=Lus10034048.g ID=Lus10034048.BGIv1.0 annot-version=v1.0 MPPDSIKTLGSSVPMGRAAQPHEIAPCYVFLACNECSSYFTGQVLHPNGNCTPFDPFVCVYLCLEVYALFLKWGILCGCLSIAGGMIVNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034048 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Lus10013878 [exp]	1.0	0.8826
AT4G05230			Ubiquitin-like superfamily pro...		Lus10018369 [exp]	4.2	0.7577
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10008931 [exp]	8.7	0.7564
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10030030 [exp]	9.2	0.6796
AT5G05340			Peroxidase superfamily protein...		Lus10030149 [exp]	16.4	0.8072
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	16.5	0.7879
					Lus10023763 [exp]	18.6	0.7804
					Lus10033211 [exp]	20.2	0.7687
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	24.8	0.7857
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10029518 [exp]	25.5	0.7391

Compare expression of checked genes

Lus10034048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.