Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015596 [exp] 79 / 9e-19 ND 41 / 2e-04 Lus10032852 [exp] 67 / 3e-13 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1) Lus10041342 [exp] 65 / 1e-12 AT5G65005 44 / 6e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000488 [exp] 64 / 1e-12 ND / Lus10027902 [exp] 62 / 6e-12 ND 38 / 0.003 Lus10025268 [exp] 61 / 6e-12 ND / Lus10012727 [exp] 61 / 7e-11 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10000349 [exp] 57 / 1e-09 AT3G09510 49 / 5e-06 Ribonuclease H-like superfamily protein (.1) Lus10037174 [exp] 52 / 3e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034050 pacid=23154839 polypeptide=Lus10034050 locus=Lus10034050.g ID=Lus10034050.BGIv1.0 annot-version=v1.0 ATGCCTCTCGCTCTGGTTTTTTCAATGCAGGACCTCCCCCCTTCTATGGGCTTGAACTATGCTGCCGCTGTTACCCGGACCCCCCAGACCCTTCCGCAAC CTTGCCCACTGCCGAGTACCCCATCCCTGATGGTACATTGTAACAGATCATTTGTAGATGATTCCCAGAAGGCGGCCTTTGGAATAATCATTTCTAATTC CAATGGTCAAATTTGTGAAGGCCGGGTTATTTTCTGTTCTTCTCCGATTGCCGTCGAAGCTCGCGCTCTCATGGAAGCCGTTTCTTTTGCCTCTCGACAT CCATCTCCGTGTGTGATCTTCTCCGATTATAAGCGTCTTATTGACTGCCTCAAGGAGCCGCCTGACAAATGGACTTGGCTATGCTATGGGTATCTTGGTG GACTCTCCGCCATCCTAAGTTCCTCCTCGCATGTCTCTGTTCGCTTTACAAAGCACTCTCTAAACAGTGCGGCAGACTGGTTGGCCTGCAAAGCTCGGTT AAGATCTATTCCCACAAACTGGTTGTCTTTTGTCCAAGAGCTATAA
AA sequence Show only first row Show all	>Lus10034050 pacid=23154839 polypeptide=Lus10034050 locus=Lus10034050.g ID=Lus10034050.BGIv1.0 annot-version=v1.0 MPLALVFSMQDLPPSMGLNYAAAVTRTPQTLPQPCPLPSTPSLMVHCNRSFVDDSQKAAFGIIISNSNGQICEGRVIFCSSPIAVEARALMEAVSFASRH PSPCVIFSDYKRLIDCLKEPPDKWTWLCYGYLGGLSAILSSSSHVSVRFTKHSLNSAADWLACKARLRSIPTNWLSFVQEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034050 [exp]	0	1
					Lus10010116 [exp]	11.3	0.6143
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	16.6	0.5760
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10006127 [exp]	19.1	0.5738
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	21.1	0.6053
					Lus10010245 [exp]	35.1	0.5531
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	38.4	0.5729
					Lus10018846 [exp]	47.7	0.5283
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	76.2	0.4924
					Lus10001123 [exp]	77.0	0.4924
					Lus10023352 [exp]	77.7	0.4924

Compare expression of checked genes

Lus10034050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.