Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19210 603 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G12770 140 / 4e-36 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 123 / 2e-30 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 116 / 1e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G60990 114 / 2e-27 DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 115 / 3e-27 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G42520 114 / 5e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G61240 114 / 5e-27 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 114 / 5e-27 ATRH8 RNAhelicase-like 8 (.1.2) AT1G77030 115 / 6e-27 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010514 [exp] 566 / 0 AT5G19210 465 / 8e-164 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 128 / 6e-32 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 127 / 1e-31 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10026871 [exp] 124 / 6e-30 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 122 / 1e-29 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10013644 [exp] 120 / 3e-29 AT3G09720 614 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 119 / 1e-28 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 118 / 3e-28 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028644 [exp] 118 / 5e-28 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092200 [exp] 665 / 0 AT5G19210 655 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G123600 [exp] 123 / 6e-30 AT1G12770 711 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 122 / 8e-30 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 115 / 7e-28 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G217800 [exp] 117 / 8e-28 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 117 / 1e-27 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 116 / 1e-27 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 114 / 4e-27 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G185900 [exp] 114 / 7e-27 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.007G068800 [exp] 110 / 4e-26 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10034052 pacid=23154771 polypeptide=Lus10034052 locus=Lus10034052.g ID=Lus10034052.BGIv1.0 annot-version=v1.0 ATGACTACCGCCGCCGTGTCGACTGTTAAGTTCCTCCACATTTCAACTGCAATTTCCGGTCCGCAACCCAGCTCAGTACCTTCCAAAGTTCTATTACTGA CCGGGAATTTCAATCGCCGGGCGTTCAGGCCCTTACGAGCAGGTCTGCACGTTTCTCCTGTCGTTACGGAAGAAGAGTCGCGTGGCAGCGGAGGAGGAGG AGGAGGTGAAGGTGTAGAAGATGATGGCGGCGTTCCCACTCTGAGGGAACTCTGCCAAGGTCACGTTCCGGACCACGTGCTCAACAAGGCGGAAGAGGTC GGATATGTTATGCCGACGGATGTGCAGGAGAAAGCTCTGCCTGTTCTTTTTAGTGGGCAGGATTGTATTGTTCATGCTCAGGTTGGTTCCGGGAAGACAC TTGCTTACTTGTTGCTGATATTCTCTGTGGTGAATGCCAAGAGATCAGCTGTGCAGGCACTGATTGTGGTTCCTACCCGAGAACTAGGAATTCAAGTAAC AAAAGTGGCTCGAATGTTGGCTTCGAAATCTGGGGATAGTGAGTTAGAGCAGAAGTCGTCGTTCACGATCATGGCTCTTTTAGATGGAGGCATGCTGAAA AGACACAAGAGTTGGCTAAAGGCAGAACCACCTTCTATAGTGGTAGCAACAATAGCAAGCTTGTGTCAAATGCTTGACAAGCACGTGTTTAAGCTTGATG CCGTAGAGGTACTGGTTATAGACGAGGTAGATTTCTTGTTCAACTCTTCAAAGCAAGTCAGTTCGCTCAAAAAGCTATTGACTTTATACTCATCAAGCGG CAGTCGGCAAACTGTTTTTGCCAGTGCATCCATCCCGCAGCACAAGAGATTTTTGTATGACTGCATACAACAGAAATGGACCAAGAGAGATGTGGTCCAT GTGCATGTGAATGCAATCAAGCCCATGCCATCCTGCTTGCAGCACAGATTTGTGGTATGCTCAAATAAACAGAGACATGAAGTTTTGCTTTCCCTATTAC ATAGTGAAGCTCCCAAGTCGGCAATCATATTTGTTGGTGAACAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCTTCGACTATTCTCTTGGTTGAGTT CTTGAGAGTTTCTTATAGAGGTTATTCAGAAATCCTCCTTTTGGAGAAGGACATGAATTTCAATTCACGAGCAGCTTCACTTTCGGAAATGAGGCAAGGA GATGGTTATCTCCTCGTAGCAACAGATATAGCTGGTAGAGGAGTGGACCTGCCCGAAACAACTCACATTTACAACTTCGATCTACCTAGAAGTGCTGTTG ATTATCTTCATCGAGCTGGAAGAACAGGTAGGAAACCCTTTTCTGAAGAGAAATGTAATGTTACCAACATTATTAAGCCAGAGGAGCGATTTGTTTTGCA AAAATACGAGAACGAATTGATGTTCAACTGTGAAGAGGTAGTTGTTTAA
AA sequence Show only first row Show all	>Lus10034052 pacid=23154771 polypeptide=Lus10034052 locus=Lus10034052.g ID=Lus10034052.BGIv1.0 annot-version=v1.0 MTTAAVSTVKFLHISTAISGPQPSSVPSKVLLLTGNFNRRAFRPLRAGLHVSPVVTEEESRGSGGGGGGEGVEDDGGVPTLRELCQGHVPDHVLNKAEEV GYVMPTDVQEKALPVLFSGQDCIVHAQVGSGKTLAYLLLIFSVVNAKRSAVQALIVVPTRELGIQVTKVARMLASKSGDSELEQKSSFTIMALLDGGMLK RHKSWLKAEPPSIVVATIASLCQMLDKHVFKLDAVEVLVIDEVDFLFNSSKQVSSLKKLLTLYSSSGSRQTVFASASIPQHKRFLYDCIQQKWTKRDVVH VHVNAIKPMPSCLQHRFVVCSNKQRHEVLLSLLHSEAPKSAIIFVGEQSEKSKKAGNAPSTILLVEFLRVSYRGYSEILLLEKDMNFNSRAASLSEMRQG DGYLLVATDIAGRGVDLPETTHIYNFDLPRSAVDYLHRAGRTGRKPFSEEKCNVTNIIKPEERFVLQKYENELMFNCEEVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19210			P-loop containing nucleoside t...		Lus10034052 [exp]	0	1
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	7.1	0.8055
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	8.2	0.8249
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	12.3	0.8060
AT5G08280		HEMC	hydroxymethylbilane synthase (...		Lus10013439 [exp]	19.1	0.8040
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	20.0	0.7262
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	22.6	0.7829
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Lus10042061 [exp]	23.5	0.7729
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	25.6	0.7817
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	34.1	0.7796
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10008594 [exp]	34.7	0.7898

Compare expression of checked genes

Lus10034052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.