Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06035 212 / 3e-70 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19250 211 / 7e-70 Glycoprotein membrane precursor GPI-anchored (.1) AT1G54860 145 / 5e-44 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19240 144 / 1e-43 Glycoprotein membrane precursor GPI-anchored (.1) AT5G19230 131 / 1e-38 Glycoprotein membrane precursor GPI-anchored (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010516 [exp] 318 / 6e-112 AT3G06035 226 / 9e-76 Glycoprotein membrane precursor GPI-anchored (.1) Lus10004470 [exp] 135 / 3e-40 AT1G54860 190 / 2e-61 Glycoprotein membrane precursor GPI-anchored (.1) Lus10029938 [exp] 136 / 7e-37 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195000 [exp] 248 / 3e-84 AT3G06035 231 / 2e-77 Glycoprotein membrane precursor GPI-anchored (.1) Potri.010G033400 [exp] 243 / 1e-82 AT3G06035 214 / 4e-71 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034400 [exp] 147 / 7e-45 AT1G54860 167 / 6e-53 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023801 [exp] 112 / 5e-32 AT1G54860 102 / 4e-28 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034200 [exp] 94 / 3e-24 AT1G54860 110 / 2e-30 Glycoprotein membrane precursor GPI-anchored (.1) Potri.005G034300 [exp] 82 / 3e-19 AT1G54860 99 / 5e-26 Glycoprotein membrane precursor GPI-anchored (.1) Potri.013G023701 [exp] 60 / 8e-12 AT1G54860 62 / 8e-13 Glycoprotein membrane precursor GPI-anchored (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034054 pacid=23154670 polypeptide=Lus10034054 locus=Lus10034054.g ID=Lus10034054.BGIv1.0 annot-version=v1.0 ATGCCGTCATCTTCAAGGCTTCCCCTTTTCCTCCTTGCTTCCTTCCTCATCTCTGCTCTTCTCTTCATTGACCCTGTTCGCTGTGATGATGAAGATGATA AGCTTCTTCAAGGCATCAACGACTACAGAAGAAGCTTGAACCTGACCTCCCTAACGGAGAACGACAATGCAGAATGCCTTGCTGGCGAAATAGCCGATCA ATTCAAGGGTCAACCTTGCACCAACACCACAGGAGCCAACACTGTGCCTGGAACCGAGCCTCAGCTTCCCAACTACCCGAGCCTCCTGGTCAAATGCCAT TTGAATGTCTCCAACACCAGGGATGGAGCTGTAATGCCTGCCTGTGTTCCCAACCTTGACCCGGCTCTCGTGCTTTCTAACTTCACCATGAGCCAGTACT CTGACAATCTGAATGACACCAAGTATACAGGAGTCGGCATTGGTACTGAAGGTGACTGGATTGTCGTTGTTCTCTCCACCAGCACTCCTGATGGAAGCTT TGCCACTTACAAAGGAGGAGAATCAGCCGGTGGTGGTATGAGGACTGCAACCGGTCTGACTTCTCCATTGCTGCTGCTTCTGCTGGTGGCATCTCTACTT CTGCTGTAA
AA sequence Show only first row Show all	>Lus10034054 pacid=23154670 polypeptide=Lus10034054 locus=Lus10034054.g ID=Lus10034054.BGIv1.0 annot-version=v1.0 MPSSSRLPLFLLASFLISALLFIDPVRCDDEDDKLLQGINDYRRSLNLTSLTENDNAECLAGEIADQFKGQPCTNTTGANTVPGTEPQLPNYPSLLVKCH LNVSNTRDGAVMPACVPNLDPALVLSNFTMSQYSDNLNDTKYTGVGIGTEGDWIVVVLSTSTPDGSFATYKGGESAGGGMRTATGLTSPLLLLLLVASLL LL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	0	1
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	2.2	0.9426
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	2.4	0.9396
AT3G06035			Glycoprotein membrane precurso...		Lus10010516 [exp]	2.6	0.9240
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	2.8	0.9234
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	2.8	0.9416
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	4.9	0.9118
AT1G72790			hydroxyproline-rich glycoprote...		Lus10006024 [exp]	5.7	0.9050
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	6.9	0.9317
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10028404 [exp]	7.1	0.8996
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	7.1	0.9317

Compare expression of checked genes

Lus10034054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.