Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27520 402 / 2e-141 AtPNC2, PNC2 peroxisomal adenine nucleotide carrier 2 (.1) AT3G05290 401 / 6e-141 AtPNC1, PNC1 peroxisomal adenine nucleotide carrier 1 (.1) AT2G39970 83 / 8e-18 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) AT3G53940 56 / 2e-08 Mitochondrial substrate carrier family protein (.1) AT2G37890 52 / 3e-07 Mitochondrial substrate carrier family protein (.1) AT5G07320 52 / 4e-07 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT1G34065 49 / 3e-06 SAMC2 S-adenosylmethionine carrier 2 (.1) AT2G47490 46 / 2e-05 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G79900 44 / 0.0001 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G58970 43 / 0.0002 ATUCP2 uncoupling protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010517 [exp] 581 / 0 AT3G05290 437 / 2e-155 peroxisomal adenine nucleotide carrier 1 (.1) Lus10015188 [exp] 399 / 3e-140 AT3G05290 480 / 4e-172 peroxisomal adenine nucleotide carrier 1 (.1) Lus10031510 [exp] 393 / 8e-138 AT3G05290 474 / 8e-170 peroxisomal adenine nucleotide carrier 1 (.1) Lus10014839 [exp] 94 / 1e-21 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 92 / 9e-21 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10028339 [exp] 75 / 2e-15 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032690 [exp] 62 / 1e-10 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 61 / 2e-10 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10001463 [exp] 53 / 9e-08 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092100 [exp] 443 / 1e-157 AT5G27520 449 / 6e-160 peroxisomal adenine nucleotide carrier 2 (.1) Potri.013G023200 [exp] 409 / 4e-144 AT3G05290 449 / 5e-160 peroxisomal adenine nucleotide carrier 1 (.1) Potri.005G033800 [exp] 408 / 9e-144 AT3G05290 433 / 1e-153 peroxisomal adenine nucleotide carrier 1 (.1) Potri.010G192600 [exp] 88 / 2e-19 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.007G019000 [exp] 79 / 2e-16 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.008G064800 [exp] 77 / 1e-15 AT2G39970 393 / 2e-137 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.002G000200 [exp] 73 / 3e-14 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.010G121500 [exp] 62 / 1e-10 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.014G125600 [exp] 49 / 2e-06 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.002G168100 [exp] 49 / 2e-06 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10034055 pacid=23154743 polypeptide=Lus10034055 locus=Lus10034055.g ID=Lus10034055.BGIv1.0 annot-version=v1.0 ATGGGTGGGATTGATCTGGAGTCATTGTCTGACGCAACTTCAGGAGCCGTTGCTTCTTTGATAAGCACAACTGTGTTGTACCCTCTCGACACCTGCAAAA CCAAATACCAAGCTGAGCTCCGTGCTCGCCACCAACGCAAGTACAGGAGCGTTGCTGATGTTTTCTGGGAGGCAGTTCGTACCAAGAAGCTTCTTTCCTT GTACCAAGGACTTGGCACCAAGAATGTACAGTCGTTCGTTTCATCGTTCCTCTATTTCTATGGCTATACTTTCTTCAAGAGGCTCTACTTGGACAAAACT GGCAACTCTTCCATGGGGCTTAAGGTTAACTTGTTGATTGCTGCTGCTGCTGGCGCTTACGCTGTTACCTTGACAATGCCATTGGATACAGCAGCTTCTA GGATGCAAACCACTGAATTTGGCAAGTCAAAGGGACTGTGGGAGACCCTTTCGGAGGGCACTTGGGGCGAGGCATTTGATGGCCTTGGGATATCATTGCT TCTCACATCTAACCCTGCCATCCAGTACACTGTATTTGATCAGTTGAAACGAAGACTACTTAAGCGGAAGCTCAAGGAAAGATCAGGTGCTGCTGATTCG TCTCCGGAGACACTTTCTGCTCTCACAGCTTTTGTTCTTGGTGCTGGTACTAAGTGTATTGCCACCACCTTCACTTACCCTGCAATCAGATGCAAAGTGA TGCTTCAGGCTGCTGAATCGGATGAAAACGGAACTGCAGAGGTCCTTCCAAAAGACAAGAGGACCATCTCAGGAGCTACGCGTGCCATCTGGAAACGAGA GGGCTTTTCCGGTTTCTTCAAAGGATTGTTAGCTCAGCATTTGAAAACAATACTGAGTTCTGCATTGCTTCTGATGGTCAAAGAGAAGATAACAAAGACA ACTTGGGTCCTTATATTGGCAATTCACAAGTATCTGTTCCTCCAACGTACCAGAATCAAGAGCATTTGA
AA sequence Show only first row Show all	>Lus10034055 pacid=23154743 polypeptide=Lus10034055 locus=Lus10034055.g ID=Lus10034055.BGIv1.0 annot-version=v1.0 MGGIDLESLSDATSGAVASLISTTVLYPLDTCKTKYQAELRARHQRKYRSVADVFWEAVRTKKLLSLYQGLGTKNVQSFVSSFLYFYGYTFFKRLYLDKT GNSSMGLKVNLLIAAAAGAYAVTLTMPLDTAASRMQTTEFGKSKGLWETLSEGTWGEAFDGLGISLLLTSNPAIQYTVFDQLKRRLLKRKLKERSGAADS SPETLSALTAFVLGAGTKCIATTFTYPAIRCKVMLQAAESDENGTAEVLPKDKRTISGATRAIWKREGFSGFFKGLLAQHLKTILSSALLLMVKEKITKT TWVLILAIHKYLFLQRTRIKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	0	1
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10036677 [exp]	1.0	0.9139
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	2.4	0.8969
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	3.5	0.8943
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10038236 [exp]	3.5	0.8736
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10014839 [exp]	3.5	0.8852
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	3.9	0.8924
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	4.9	0.8794
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	6.0	0.8951
AT1G44920			unknown protein		Lus10018656 [exp]	6.5	0.8475
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	6.7	0.8684

Compare expression of checked genes

Lus10034055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.