Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19130 46 / 6e-05 Replication factor-A protein 1-related (.1) AT5G45400 44 / 0.0002 ATRPA70C Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006887 [exp] 441 / 8e-147 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10023006 [exp] 280 / 2e-87 ND / Lus10036312 [exp] 281 / 1e-86 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003025 [exp] 269 / 7e-84 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10016946 [exp] 260 / 3e-81 ND / Lus10025008 [exp] 245 / 2e-74 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10042979 [exp] 243 / 3e-71 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 239 / 2e-70 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000293 [exp] 191 / 3e-54 ND 48 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165480 [exp] 76 / 8e-15 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 73 / 2e-13 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.006G172600 [exp] 66 / 1e-11 ND / Potri.014G182232 [exp] 65 / 2e-11 ND / Potri.003G004301 [exp] 59 / 6e-10 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034056 pacid=23154649 polypeptide=Lus10034056 locus=Lus10034056.g ID=Lus10034056.BGIv1.0 annot-version=v1.0 ATGTTCCTCCTGGGTGTTCGCATCCAAGGCGATGCTCTCCGGAGTTTTCTCGGTATACTGCAGAAATGGATTTCTCCTGGCTACGTTTACAAGATCTCAG GCTACTCACTCCGAAAACCCCGCGATAGGTACCGCATTTGCCGTTACCCCCATTGGCTTGCTCTAAGTGCGGCTACTCAGTTTGAACTTCAAACTGATCC GAATCCACCATTCGCACCAGAGGTGGTTGGTGCGGGGCCACCGAACTATGTTGACCGTCCCACCGGTATATCTGCTGTTCAGAAACTAACTGTTGTGGAT TCAGGTGGTCTCGAAGTCGACGTGTCCCTCTGGTCTGACCTTTCTTCCATAATTGATGCGGATACTGTGGTTTTGGATGATATGACAAATCCAATTATTG TTGCATTTACTAGCTTCCGCATCGATACTCATTTTGAAAAGACAAGACAACATGTTGAGGCCTCCTTTAGGAACATTCATGAACTGCTGGCTATGTATGC CGCCGGGGGGAATCTGGAGCCTGCATATAATTGTGTTGCTACAATTCTTGATTTCGATCGCGAAAAGAATTGGTGTTGGCGGGCTTGCCCCACCTGTTCC CGAGCTGTTGTACCAAATGGTCACGAGTACTGGTGCATTGAACATGATACAGTTCTGACAGTCGATGTGGCTTACAGGTACCGCCTGAAACTACTAGTGT CCGATCCAACCACTCAGGCTACGTTTGTTCTACTTGGAATGACCACTGATAAGATCATGCCTATCTCTGCTGCTGAACTCGCCATGGCATATCCTGACGA ATACGGTGAGCTGCCACCGCCGTTGCGCCTGCTACTCAATCAAAAAGTCACATTCGAGGTCCATCTCCCCCGTCACTTGCGTGTCAACAGCTTTCCCGAT ATCAGGATTTCCAAAATATGGGGCTTGGTCATACCGCGGGCTCAGCTTGTTGCTGCTCTCCCCCCTCCACCGCCGCCCCGCCCGCCAAGCCCACCTGCAC GCCATGACACACCTATCCCTCCTGATCCCAACTATGTATACACCATCCCTACTTACAACCAACGAGCTGGATCGTCTCAAACTGCCGCTGGTCGACTAGA TCCTACCACTCCTTTTCAGCTCCAACCCACTCCACTGTCCCCTATTCCTCGTCGCAGTTGCAAGACACCTGCACCGCAGACCGTGCCGCAGTCCAAAACT GTGGCACCCGCCACAAAACGACCTAGGAAAATGCTTGCAAGCAAACCTTATGTTGCAAAATCAGCAACTGCTCCTAAAAAGACAGCACACGTGCCCTCTG TGACTCTATCCAATAAAATTCTGCTAGCAAAAAAAGGTCGGTCCGCACAACCACTTTTAGCCATTGCCGTTCCCAAGACACCTCCTGCAAAGCGTTCGCG CTCGGTTGCACCTCCAAATCTAACAAATATGAGCTCGACTCCATCTGTCACTGTTGTCGATCATGCTGCCCCTCGAATGCCTGAAACATATATGACAGAT GATATACCTCTTGCGCTCCTGGTCCGCCAGAATCGAGCAGCTCAGCAATCATCTGCTACAACTTTTGTCCCTACTTTATGA
AA sequence Show only first row Show all	>Lus10034056 pacid=23154649 polypeptide=Lus10034056 locus=Lus10034056.g ID=Lus10034056.BGIv1.0 annot-version=v1.0 MFLLGVRIQGDALRSFLGILQKWISPGYVYKISGYSLRKPRDRYRICRYPHWLALSAATQFELQTDPNPPFAPEVVGAGPPNYVDRPTGISAVQKLTVVD SGGLEVDVSLWSDLSSIIDADTVVLDDMTNPIIVAFTSFRIDTHFEKTRQHVEASFRNIHELLAMYAAGGNLEPAYNCVATILDFDREKNWCWRACPTCS RAVVPNGHEYWCIEHDTVLTVDVAYRYRLKLLVSDPTTQATFVLLGMTTDKIMPISAAELAMAYPDEYGELPPPLRLLLNQKVTFEVHLPRHLRVNSFPD IRISKIWGLVIPRAQLVAALPPPPPPRPPSPPARHDTPIPPDPNYVYTIPTYNQRAGSSQTAAGRLDPTTPFQLQPTPLSPIPRRSCKTPAPQTVPQSKT VAPATKRPRKMLASKPYVAKSATAPKKTAHVPSVTLSNKILLAKKGRSAQPLLAIAVPKTPPAKRSRSVAPPNLTNMSSTPSVTVVDHAAPRMPETYMTD DIPLALLVRQNRAAQQSSATTFVPTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	0	1
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10002188 [exp]	1.0	0.9284
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	3.5	0.8402
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	4.2	0.8558
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	5.5	0.8904
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	9.0	0.7155
AT2G34930			disease resistance family prot...		Lus10039529 [exp]	10.1	0.6514
					Lus10003695 [exp]	11.0	0.8122
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	11.2	0.7416
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	12.0	0.8122
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	13.0	0.8122

Compare expression of checked genes

Lus10034056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.