Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06030 666 / 0 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G09000 543 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 518 / 2e-177 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G53570 276 / 3e-84 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 264 / 2e-77 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 226 / 1e-64 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G13530 230 / 5e-64 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 229 / 1e-63 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08500 221 / 1e-63 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08480 203 / 4e-56 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010519 [exp] 1165 / 0 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 531 / 0 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 478 / 6e-161 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10002096 [exp] 275 / 1e-79 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10032279 [exp] 263 / 1e-76 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 262 / 1e-76 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 253 / 1e-75 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10027496 [exp] 257 / 9e-75 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 253 / 6e-74 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149500 [exp] 787 / 0 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.010G092000 [exp] 780 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.013G022700 [exp] 554 / 0 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G033400 [exp] 503 / 6e-171 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.007G106800 [exp] 272 / 2e-82 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 268 / 6e-81 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.012G143900 [exp] 263 / 1e-76 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 263 / 1e-76 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 261 / 3e-76 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 252 / 5e-73 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034060 pacid=23154790 polypeptide=Lus10034060 locus=Lus10034060.g ID=Lus10034060.BGIv1.0 annot-version=v1.0 ATGCAAGATCTATTCGGATCGGTGCGGCGGTCGCTGGTGTTCACATCCACCACTTCAGTGGACGATGCTGGAGGAAGGTTCTCTGGTTTCGTGGGCAAGT TAGGGTCAAGCATTCGCAAATCCCGCAATGGCCTCTTCGCTAAACCTCCGACGCTTCCTCCGCCTTGTAGAAAAGACGACGGCCCTCCGATCCGGTGGAG AAAGGGTGAGTTGATTGGTTCTGGTGCGTTCGGTAGGGTTTACATGGGTATGAATCTCGATTCTGGTGAGCTCCTCGCTGTCAAGCAGGTTTTGATTGCT GCTAACAGTGCTTCAAAAGAGAAAACCCAGGCTCACATTAGAGAGCTGGAAGAAGAAGTCAAGCTTCTGAAGAACCTTTCCCATCCAAACATCGTGAGAT ATTTGGGAACCGTGAGGGAAGATGACTCATTGAATATTCTGTTGGAATTCGTCCCCGGCGGGTCCATTTCGTCACTTTTGGGGAAATTTGGATCATTTCC CGAGTCTGTAATCAGAATGTACACGAAACAGCTGTTATTGGGACTGGAGTACCTTCACAAGAATGGTATTATGCATAGGGACATCAAGGGGGCAAACATT CTTGTGGATAACAAGGGTTGCATTAAACTTGCAGACTTTGGAGCTTCCAAGAAAGTTGTTGAACTTGCTACTCTAAATGGTGCCAAGTCAATGAAGGGAA CTCCATATTGGATGGCGCCAGAAGTTATCCTTCAGACTGGGCACAGCTTCTCTGCTGATATATGGAGTGTTGGATGTACAATTATTGAGATGGCTACAGG AAAGCCCCCATGGAGCCAGCAATATCAGGAGGTTGCTGCTCTGTTCCATATTGGGACTACCAAATCTCACCCACCAATTCCCGAACATCTATCTGCTGAG GCTAAAGATTTTCTGTTGAAATGTTTACAGAAGGAACCAGACTTTAGGGCCTCTGCATCTGACTTGCTGAAGCATCCATTTATCACTGAGGATTACAACG AATCTTCATTGCCATTCCGCAATTCACTCAGGGACTCGAGGAATTCCATGACTAGCACTGGGATCAACCTTAGAAACTCCATGAACCTTTCAGTCAGAAG GTCTTGTGGAGGCTTAAAGGATGTTGGGGAAATGGGGGGTATCAGGTCTTCAATGATACATACCGAGAGTACATCAGGATCAGGGTCCTATTGGCATGGC GCTAATTCCGATGATGATATGTGTCAGATGGATGATACAGATGATTTTATGGTTAGAACATCGTCAAGGTTCAAGTCTGTCTTTTCGTCCACCAACTTAA ACAAGAGTTTCAATCCAATGTGTGAGCCCACTGATGAGTGGCAGAGCATGTCGAATGGAAGTTCAGGAATGAGGAGAAGTGAACTCCGTTCCAGTCAACT AATTAATGAGGGTTTGAACAACAGTCTCCGGATGTCCGGAAAGGAAGGAAATGAATTCACATTTCCATCAGGATCATTGGCAACTGAGGATGACGAAGAA GTTACCGAGTCAAAAATTCGAGCATTTTTGGATGAGAAGGCTTTGGATTTGAAGAAGCTGCAAACAAAGTTCTACAGCACATTGACTCCTACTGGGAAGA AGAATAATGAGAATATTAGAGGTTCGGTCAGCTTATTACCCCCTAAAAGTAAGTCACCAAAACAGCTGATGAGCAGAAGACTTTCTTCGGTTGTGGATCT GGGTATGAATTCAAGTTACCGAGCGAATGAAAATGGTGTCATCGACTCCAGAGCTTTACATGAAATTCAACCACCTCAGACTAATGAGTGGAAAGCTGGT AATACCTGTCATGACGAGCAGCAGAAATCAATCACCCTTAGTGCAAGCTTTGCTGAGCAGCAAAGAAAGTGGAAACAAGAGCTTGACGAAGAACTCGAAA GGCAACGAGGCAAGTTGCTACCACTATTACTTAGGAGATAA
AA sequence Show only first row Show all	>Lus10034060 pacid=23154790 polypeptide=Lus10034060 locus=Lus10034060.g ID=Lus10034060.BGIv1.0 annot-version=v1.0 MQDLFGSVRRSLVFTSTTSVDDAGGRFSGFVGKLGSSIRKSRNGLFAKPPTLPPPCRKDDGPPIRWRKGELIGSGAFGRVYMGMNLDSGELLAVKQVLIA ANSASKEKTQAHIRELEEEVKLLKNLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHKNGIMHRDIKGANI LVDNKGCIKLADFGASKKVVELATLNGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTIIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLSAE AKDFLLKCLQKEPDFRASASDLLKHPFITEDYNESSLPFRNSLRDSRNSMTSTGINLRNSMNLSVRRSCGGLKDVGEMGGIRSSMIHTESTSGSGSYWHG ANSDDDMCQMDDTDDFMVRTSSRFKSVFSSTNLNKSFNPMCEPTDEWQSMSNGSSGMRRSELRSSQLINEGLNNSLRMSGKEGNEFTFPSGSLATEDDEE VTESKIRAFLDEKALDLKKLQTKFYSTLTPTGKKNNENIRGSVSLLPPKSKSPKQLMSRRLSSVVDLGMNSSYRANENGVIDSRALHEIQPPQTNEWKAG NTCHDEQQKSITLSASFAEQQRKWKQELDEELERQRGKLLPLLLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10034060 [exp]	0	1
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	1.0	0.9779
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Lus10010519 [exp]	3.5	0.9680
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	4.5	0.9690
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	5.7	0.9669
AT5G17160			unknown protein		Lus10038036 [exp]	6.0	0.9636
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	6.3	0.9650
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	6.3	0.9624
AT1G72250			Di-glucose binding protein wit...		Lus10005582 [exp]	6.5	0.9632
AT1G49870			unknown protein		Lus10002116 [exp]	9.0	0.9589
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	11.8	0.9529

Compare expression of checked genes

Lus10034060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.