Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19260 91 / 4e-21 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT4G02810 72 / 2e-14 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT3G06020 69 / 2e-13 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1) AT1G03170 68 / 3e-13 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT5G22090 54 / 4e-08 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT1G54740 49 / 9e-07 Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010520 [exp] 440 / 2e-157 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 177 / 1e-54 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 104 / 2e-26 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10021930 [exp] 98 / 5e-25 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 89 / 1e-20 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 76 / 6e-16 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 71 / 3e-14 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 65 / 1e-11 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 60 / 4e-10 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149600 [exp] 134 / 4e-37 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 109 / 1e-27 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 108 / 1e-27 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 92 / 2e-21 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 59 / 7e-10 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.004G144000 [exp] 49 / 5e-07 AT5G22090 45 / 6e-06 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.001G216000 [exp] 49 / 3e-06 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G037600 [exp] 41 / 0.0005 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10034061 pacid=23154851 polypeptide=Lus10034061 locus=Lus10034061.g ID=Lus10034061.BGIv1.0 annot-version=v1.0 ATGGGAACCGTAGTTTGCCAAGGCTTACAGTCGTGCCTCGAATCCCAGATCGCCGAGTCCCGGACTCTTCGTCTCAGACTGTCCGCACCCAAGCCCAGCT CAGAATCGCCCGGGTGGGGCTCCATCCAGACCTTAACCGACCCCACCCACTTCCTCAAACCGGCGCCCATGGTTCTGAAACGCTGCGTTTCGTCCTGCCT CAGCGACAAAAGCCTCGAGCTCTGCACCGAGAATCTCGGCAGTGAAACCGGCGCCGACCAACAACTATTCTTTTCCGATCCTCATCATGACAGCAATTAC TACCTCTTCTCCTCCGAACAAAGAATTATCGGGAATTCCGATGAGAAGGCGACGGAATCGCCGGCGGCGGTTAAGAAATCGAGGACGGCCCCGAGGGGGA ATGGGTTTCCTCCGCCGCTGACGACAATGAGGGGCCCAGAATTGATAAAAGTGAGGCCCCACAGGGAAGGAGGGAGGCTGGTGATGAAGGCCGTGAAGTT GCAATCTCCACCGTCATGTTTCCAAGCGGAAAGGATCGACAGCCGCCTTCGCCTCCACGTGGTGGTTGATCATTCGCTGGATACCGCGTTTGACTACTCT GCTTCAACTGTGACAGAATGCAACGATAATGATAATAATACTAATTACGCGGAAGAGAATGAAATCCGAGAAGAGGAAGGAATGGAAAGGAGGAATACAA GTCATCATCATTACCATCATCATGATCAACATCAACATGAGAATGTGAATTATGTGAGCAGTGATGATAGGAAAAAGGGAGGACTGCTGTTGAATTGGGA GCCTTTTCGGGTGGCTACGGCTCTTCAAGTTTGA
AA sequence Show only first row Show all	>Lus10034061 pacid=23154851 polypeptide=Lus10034061 locus=Lus10034061.g ID=Lus10034061.BGIv1.0 annot-version=v1.0 MGTVVCQGLQSCLESQIAESRTLRLRLSAPKPSSESPGWGSIQTLTDPTHFLKPAPMVLKRCVSSCLSDKSLELCTENLGSETGADQQLFFSDPHHDSNY YLFSSEQRIIGNSDEKATESPAAVKKSRTAPRGNGFPPPLTTMRGPELIKVRPHREGGRLVMKAVKLQSPPSCFQAERIDSRLRLHVVVDHSLDTAFDYS ASTVTECNDNDNNTNYAEENEIREEEGMERRNTSHHHYHHHDQHQHENVNYVSSDDRKKGGLLLNWEPFRVATALQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10034061 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	1.0	0.9108
					Lus10018336 [exp]	7.2	0.8031
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	7.9	0.8114
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	19.4	0.8050
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	27.5	0.7506
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	28.3	0.7791
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10003274 [exp]	29.0	0.7083
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	32.1	0.7886
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	36.3	0.7991
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	44.9	0.7711

Compare expression of checked genes

Lus10034061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.