Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 528 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT4G31750 79 / 8e-16 WIN2 HOPW1-1-interacting 2 (.1) AT3G51470 79 / 1e-15 Protein phosphatase 2C family protein (.1) AT1G07160 77 / 7e-15 Protein phosphatase 2C family protein (.1) AT2G30020 73 / 1e-13 Protein phosphatase 2C family protein (.1) AT5G10740 72 / 3e-13 Protein phosphatase 2C family protein (.1) AT2G40860 70 / 2e-12 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (.1) AT5G53140 66 / 2e-11 Protein phosphatase 2C family protein (.1) AT5G24940 66 / 2e-11 Protein phosphatase 2C family protein (.1) AT1G09160 65 / 6e-11 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010521 [exp] 930 / 0 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10041216 [exp] 707 / 0 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 684 / 0 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10020104 [exp] 76 / 1e-14 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 75 / 1e-14 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026381 [exp] 76 / 2e-14 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 71 / 7e-13 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 70 / 1e-12 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10042430 [exp] 69 / 1e-12 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149700 [exp] 652 / 0 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.010G091500 [exp] 635 / 0 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.005G102500 [exp] 84 / 3e-17 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 84 / 5e-17 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.018G013900 [exp] 76 / 8e-15 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.019G071600 [exp] 76 / 2e-14 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 74 / 4e-14 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 73 / 4e-14 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G253700 [exp] 74 / 5e-14 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 73 / 1e-13 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10034062 pacid=23154737 polypeptide=Lus10034062 locus=Lus10034062.g ID=Lus10034062.BGIv1.0 annot-version=v1.0 ATGCTTTTGCATTCACCCCGCACCAAGGAATTTGTCCACAAAACGAAGCTTCCATCGCCATCTTCTGCCCCTCCCCAAGCTGCTGATAGCTTGGTTTTAG AGGTAGTTCTAGATCATGTAGAAGACATTCAACTTGGGCAAACACTCAAGTTTTCTCCATTCGCTGGACGTTTGCCTGAGGTGCAGAAACATTTTAGACA AGAGAATCAAATTCCGAATACCCAGCCTGGTTCACAAAATGATAAGTTATCTGGATCCACAATCAAGACTAATCATGATCAAAGAAGCTGCCTCTCCCTT GAGGTCATCTCTGGTCCTTCTAAGGGACTACGCTGCTCTGTGCAGTCAACAAGTGCTTCACGGCTTCCTGTGACCCTTGGAAGAGTTTCTGGCGACTTAC TGTTTAAAGACTCGGAGGTGTCAGGGAAACATGCTATGGTCAACTGGAATGCAGAGAAACTGAAATGGGAGGTGGTTGACATGGGTAGCCTCAATGGAAC ACTTCTTAATTCTCGGCCAATTAACCACCCTGATTCTGGAAGTAGACAATGGAGTAAGCCAGATGAGCTTTCAAGTGGTGATATAATAACTCTTGGCACA ACATCAAATGTACAGGTCAATCTAACTTCTATGTCGGAAAGCTGGATACCCTTTAGCGTGGGTATGGCTTCCGATCCTATGGCTTTGCGCCGTGGAGGAA AGAAGCTACCTATGGAAGATGTGTGTTATTATTCCTGGCCCCTGCCAGGCATTCCCAAGTTTGGTGTTTTTGGTATTTGTGACGGACATGGTGGCGTAGC AGCTGCAAAATCTGCCAGCAAGATGTTGCCGGAGAAATTAGTCAGTATCTTAGCAAACTCCGAAGTAAGGGAGAAGGTTGTATCACAAGGCGAAGCTTCT AATGTTCTTAAAATGGCATTTTCTCAGACAGAAGCTTCCATGAATAACTATTATGAGGGTTGTACAGCTACAGTGCTTCTGGTTTGGTCTAATGATGGCG AAGTATTTTTTGCCCAATGTGCAAATGTTGGGGATTCCTTCTGTGTGATGAACGTCAATGGGAAGCAGATCAAGATGACAGAAGATCACAGAGTAACTAG CAACTCCGAAAGACTTCGATTCAGTGGAATCGGAAAGCCATTGAAAGCTGGGGAAACCCGTCTTTTTGGTAGGAAAAATGGCTATACAACGTCATATGTT CCATTGGTTACCGTAACTTATACTATTGCTTACATCGTATTCAACTTTGAATCAGGTCTGAATCTTGCTCGCATGCTTGGAGACAAATTCCCAAAAGAGC AAGATCCTCGTTTCAGTTCAGAGCCTTACATAAGTGAAGTCGTCCGCATAGATCAACCAAGCGGCTGCTATGCACTATTAGCCAGCGACGGGTTTTGGGA TGTTGTCAGTGTTAAAAAGGCTGTTCAGCTGGTCCAGCAGGAAAATGAGAAGCAGCATTTAGCTTGGGAGAATCCAGCAGAGAAGGTTGCTAATGCGTTG TTGAGTGGAGCAAAAGACCAGCGTACAAAGGATAATACCTCCATACTTTTCTTGGATTTTAAAACCAAGTTTAGATGGCCGCCGTGTAAAGAGTTAGATC TCAGTAGATGA
AA sequence Show only first row Show all	>Lus10034062 pacid=23154737 polypeptide=Lus10034062 locus=Lus10034062.g ID=Lus10034062.BGIv1.0 annot-version=v1.0 MLLHSPRTKEFVHKTKLPSPSSAPPQAADSLVLEVVLDHVEDIQLGQTLKFSPFAGRLPEVQKHFRQENQIPNTQPGSQNDKLSGSTIKTNHDQRSCLSL EVISGPSKGLRCSVQSTSASRLPVTLGRVSGDLLFKDSEVSGKHAMVNWNAEKLKWEVVDMGSLNGTLLNSRPINHPDSGSRQWSKPDELSSGDIITLGT TSNVQVNLTSMSESWIPFSVGMASDPMALRRGGKKLPMEDVCYYSWPLPGIPKFGVFGICDGHGGVAAAKSASKMLPEKLVSILANSEVREKVVSQGEAS NVLKMAFSQTEASMNNYYEGCTATVLLVWSNDGEVFFAQCANVGDSFCVMNVNGKQIKMTEDHRVTSNSERLRFSGIGKPLKAGETRLFGRKNGYTTSYV PLVTVTYTIAYIVFNFESGLNLARMLGDKFPKEQDPRFSSEPYISEVVRIDQPSGCYALLASDGFWDVVSVKKAVQLVQQENEKQHLAWENPAEKVANAL LSGAKDQRTKDNTSILFLDFKTKFRWPPCKELDLSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10034062 [exp]	0	1
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	3.6	0.8439
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	5.1	0.8369
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	11.7	0.8311
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	15.2	0.7966
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	21.4	0.8214
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	21.5	0.7966
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	24.7	0.8176
AT1G63500			Protein kinase protein with te...		Lus10001998 [exp]	26.6	0.8048
AT1G23790			Plant protein of unknown funct...		Lus10041407 [exp]	28.2	0.7975
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	31.5	0.8189

Compare expression of checked genes

Lus10034062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.