Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19300 418 / 1e-145 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010522 [exp] 100 / 2e-22 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149800 [exp] 490 / 2e-174 AT5G19300 486 / 2e-172 unknown protein Potri.010G091400 [exp] 457 / 8e-161 AT5G19300 451 / 3e-158 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF02598 [flax] [poplar] Methyltrn_RNA_3 Putative RNA methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034063 pacid=23154706 polypeptide=Lus10034063 locus=Lus10034063.g ID=Lus10034063.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAGAAGAGAGCTGAACTTGAACCTGAAGCTGAAGGACTAACTGTATCGGCTGACAATAACGAAATGGTTCAGGAGTTCGTCAATGGCG ATTCTAACAAAAAGAGGAAGAAGGAGAAGAAGAAGAAGACCAAGCATGTGGAGAAGGAAATGGTTGATGAGACAGTAAACGAAGAAGGTAACGAATGTAA GGAGATACCTACAGTTAGCATAGCAGTTTCTGGTTCCATCATCGACAACGCTCAGTCTCTCGAGCTTGCTACTCGCTTGGCTAGTCAGATTGCTCGTGCC GCCACCATCTTCAGGATAGACGAGATTGTGGTATTCGATAATAAGGCGACTGCGACGAATGAGGATCCCACCACAACAATGAACAGCAGCTCTGATGATA ATGAAAGTGGTGCTGCTTTTCTAGTCAGGATATTAAGGTATCTTGAGACTCCGCAGTATCTGCGGAAGGCTCTCTTCCCCAAGCACAATAGCTTAAGATT TGTGGGAATGTTGCCTCCGCTAGACGCTCCACATCACCTGCGCAAGCATGAGTGGGGTCCGTTTCGGGAAGGTGTCACATTACATGAGAATTGTCCAGAC CCTTCTGGAACGCTTGTTGATGTAGGTTTGACTAAGAATGTTACAATTAATCAACGGCTTGAAGCGGGGACACGAGTGACAGTTGCTATGGGAATTGATC GGAATTTGGATTCAGGTACACTACGTTCAGTTGTTTCATTGTCGAAGCCCAGGGAGGAAGCTGGAATGTACTGGGGTTATCGAGTGCGATACGCTTCTAA TATCAGTGCAGTGTTCAAGTATTGCCCATTCAAGGGTGGTTATGACCGCTCGATCGGTACGTCTGAGCATGGTTTAAAAGTTTGCTCTTCTGAGCTTGAT TTGGCTCCTTTCAAGCATCTGTTGATTGCTTTTGGTGGACTTGCTGGATTGGAAGAAGGTGTTGAAGAGGACAGTAGCTTAAAGGGTAAAAATGTGCGGG CGGTGTTTGATTCATATTTGAACCTATGTCCTAATCAAGGGAGTCGGACAATTCGAACAGAGGAAGCAATCCTCATATGCCTCCAATATTTCCAAGAACC TATAAACCGTGCATTGCAGAGATCGCATAACTGA
AA sequence Show only first row Show all	>Lus10034063 pacid=23154706 polypeptide=Lus10034063 locus=Lus10034063.g ID=Lus10034063.BGIv1.0 annot-version=v1.0 MGKKKKRAELEPEAEGLTVSADNNEMVQEFVNGDSNKKRKKEKKKKTKHVEKEMVDETVNEEGNECKEIPTVSIAVSGSIIDNAQSLELATRLASQIARA ATIFRIDEIVVFDNKATATNEDPTTTMNSSSDDNESGAAFLVRILRYLETPQYLRKALFPKHNSLRFVGMLPPLDAPHHLRKHEWGPFREGVTLHENCPD PSGTLVDVGLTKNVTINQRLEAGTRVTVAMGIDRNLDSGTLRSVVSLSKPREEAGMYWGYRVRYASNISAVFKYCPFKGGYDRSIGTSEHGLKVCSSELD LAPFKHLLIAFGGLAGLEEGVEEDSSLKGKNVRAVFDSYLNLCPNQGSRTIRTEEAILICLQYFQEPINRALQRSHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19300			unknown protein		Lus10034063 [exp]	0	1
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	1.0	0.9547
AT5G66540			unknown protein		Lus10001234 [exp]	4.9	0.9061
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	7.1	0.9214
AT3G56070		ROC2	rotamase cyclophilin 2 (.1.2)		Lus10022012 [exp]	7.7	0.9161
AT2G32170			S-adenosyl-L-methionine-depend...		Lus10031038 [exp]	8.2	0.8988
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	9.8	0.9185
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	9.8	0.9253
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	11.2	0.9181
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	14.6	0.9257
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	15.2	0.9161

Compare expression of checked genes

Lus10034063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.