Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06010 1380 / 0 ATCHR12 Homeotic gene regulator (.1) AT5G19310 1293 / 0 Homeotic gene regulator (.1) AT2G28290 559 / 3e-171 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G18620 474 / 2e-149 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 472 / 1e-148 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT2G46020 461 / 4e-138 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G66750 415 / 2e-130 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G13370 417 / 4e-124 CHR5 chromatin remodeling 5 (.1) AT2G44980 365 / 7e-111 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT2G25170 375 / 1e-110 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010522 [exp] 1938 / 0 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10012798 [exp] 546 / 2e-166 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033967 [exp] 467 / 2e-141 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10036371 [exp] 461 / 1e-137 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10041735 [exp] 422 / 1e-132 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10009711 [exp] 414 / 2e-123 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 414 / 1e-122 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10024019 [exp] 375 / 8e-115 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041019 [exp] 372 / 3e-109 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G149900 [exp] 1513 / 0 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 1494 / 0 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G019150 [exp] 582 / 5e-179 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 575 / 2e-176 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.010G021400 [exp] 475 / 7e-150 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 471 / 2e-148 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.014G086500 [exp] 459 / 4e-137 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.002G160900 [exp] 456 / 2e-136 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.019G129900 [exp] 419 / 2e-132 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 414 / 4e-130 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034064 pacid=23154702 polypeptide=Lus10034064 locus=Lus10034064.g ID=Lus10034064.BGIv1.0 annot-version=v1.0 ATGGGGTCTCAGCCCGACCACCTGCAACAGCCCACTCCTGACCCTGCTCCTTCTCCAGACCATGTCCAGCAGACTAAATCCCTCATCTCTGCTCTCAATT TCGTCTCCCGGAACCTCCCTCTGCCTCCTGACGTCCTCCAGACGGTTTCCTCTATCTATCTTGCCGGCCCAGATGAAGATAATGCTCCGACGGAGGATGA TAATGCTGCTGAGGGTCCTGAGATATCAGTGAAAGGTGATTTGATGGCTGAATTTGAGGATGCACTATCAAACCAGAGATCCAAATTTATGTCTGGCTCT GTGCTAGCGGACTCAAGGATGAAACGATATCAAAGCACTGTCGAACACCGAGTGAATGAACTCGAAGAATTGCCTTCAACTAGAGGGGAGGATGTGCAAG CAAAGTGTTTACTTGAGCTTTATGGACTAAAGTTGGGAGAGCTTCAAAGGAAAGTTCGATCTGAAGTCAATTCAGAATACTTACTTCGTTTGAGTTGTGC CTGTCCCGACAAGCAGTTGTTTGACTGGAGTATGATGCGACTGCGGCGTCCTATGTATGGTGTAGGAGATGCTTTTGCTACGGAAGCTGATGACCAGTTC AGAAAGAAACGTGATGCTGAGAGGTTGTCAAGGTTAGAGGAGCAAGAAAGGAACAATTTCGAGACTAGAAAAAGGAAATTTTTCGCAGAAGTACTTAATG CGCTGCGGGAGTTTCAGCTGCAAAACCAGGCTTCTCTTAAGCGTCGAAAGCAAAGAAATGACTCGATCCTGGGGTGGCATACAAAACAAAGGCAACGTGC TACTCGGGCTGAAAAATTAAGGTTCCAAGCCCTAAAGGCTGATGACCAGGAAGCCTACATGAGATTAGTGAAGGAGAGCAAAAATGAACGATTGACAATG CTTCTTTCAGAAACAAATAAACTCCTTGTCAGTCTGGGAGCTGCCGTGCAGCGCCAGAAAGATAATGCAGATGGCATTGAGCCCTTACCAGATTCAGAAG CAGAGTCAGGTGAGGTTGATGGTGATTCTGATAATGGTGAAGATACTGCTGATTTGCTAGAAGGTCAGCGACAGTACAACTCGGCCATTCATTCAATTGA GGAGAAGGTGATCGAGCAGCCCTCAATACTGAAAGGTGGACAGTTAAGACCTTACCAAGTAGAGGGCCTTCAGTGGATGGTCTCTTTATTTAACAACAAT TTAAACGGGATTTTGGCTGATGAGATGGGATTGGGGAAGACGATTCAAACTATTTCATTGATTGCATATCTCAAGGAGAAGAAGGGTATCGCTGGACCGC ACATTATAATGGCCCCAAAGGCTGTCCTGCCAAATTGGATCAATGAATTCGCAACTTGGCTTCCTAAGGACGTGATCAAGGCGGTTCATTATGATGGCCG TGCTGACCAGAGAAAAGATTTGAGAGACCATTTATCCAAAGAGGGCTTTGACGTTTTAATCACACATTATGACCTACTTATGAAGGACAAATCATTTCTG AAGAAAATCAACTGGGTTTATCTTATTGTTGACGAAGGACATCGATTGAAAAATCATGAGTGTGCTCTGTCACGAACTCTTGAATCAGGATTTCAGTTTC AACGCAGACTTCTATTAACTGGAACCCCAATACAGAATAGTTTACAGGAGTTGTGGTCGCTCCTCAACTTTCTACTCCCTAGTATTTTCAACTCAGTAGC GAAATTTGAAGAATGGTTTAACTTGCCCTTTGCCGATCGAGGTGACATTAGTCTTACTGAGGAGGAACAGTTGCTGGTTATTCGCCGTCTACATCATGTT ATAAGACCCTTCATATTGAGGAGAAAGAAGGATGAGGTTGAGAAATTCCTTCCTTCAAAGTCGCAGGTTATTTTAAAGTGTGATATGTCGTCATGGCAAA AGGTTTATTATCAACAAATTACAGAGATGGGCAGAGTTGGGTTGCAGAATGGATCTGGGAAGTCAAAAAGTTTACAGAACCTAACAATGCAGCTGAGGAA GTGCTGTAATCATCCATACCTTTTCGTAGGAGATGACTATAACATGAATCAGATTGATGAAATCACCAGGGCATCAGGGAAGTTTGAGTTGCTGGACCGA CTACTTCCAAAGTTACGTGCCACGGGGCACAGGATTCTGCTTTTCTCGCAGATGACGAAACTGATGAACGTACTTGAGATCTATTTGAGGCTCCATGACT ACAAGTATCTTAGACTCGATGGCACAACTAAAACGGAGGAAAGAGGCATTAAACTGAAGCAGTTCAATGCTCCAGACTCTCCATACTTCATGTTTCTTCT GAGCACACGAGCAGGAGGGCTTGGATTGAATCTGCAGACTGCAGACACAGTGATCATGTTCGATAGTGATTGGAATCCTCAAATGGATCAACAAGCTGAG GATCGTGCACATCGTATAGGGCAAAAGAAGGAAGTCCGGGTATTTGTGCTTGTTAGCGTTGGCTCAATTGAAGAGGTGATCTTGGAGCGTGCAAAGCAGA AGATGGGCATTGATGCAAAGGTCATTCAGGCCGGACTTTTTAACACCACATCCACTGCTCAGGACAGAAGGGAGTTGCTGGAAGAAATTATGCGCAAAGG GTCAAGTTCACTGGGAACAGATGTGCCAAGTGAGAAGGAAATCAACAGGCTGGCGGCCCGATCACTGGAAGAACTCCGGTTGTTTGAGAAGCTGGATGAG GAGAGAAGGAGGAAGGAAAATTACAGGCCTCGTTTGATGGAAGAAAAGGAGGTTCCTGAGTGGGCATATCAGAACATATCCAAGGATGATAAGGCCAGCA AAGGTTTTGACCAGACTGCAGTGCTGGGAAAACGCAAGAGAAAAGACGTTAGTTATGCCGATACATTGACTGATCGGCAGTTCTCCAAGGCAGTGGAAAA TGGAGACTACATAGCGACATTATCAGCTAGAAGAATTGATACGCCTCCTCATCGTGCTGCTGCGATGCCTAAGTTCTCTGAAGGTAATCAACTTGTCAGC AATGGTGCTTCTCAGGCAGCAGAGTCTATGAATGAAACGATGAGCGAAGGAACCAGTGAAGAGATATACATGTCAGCACCGAGAAGAATGAATCCTGCTG TTGATTCTGGTATGGATAAGTATGAGTTGCAGAGCAGCAGCGTAATGTGGAGCGGGCAAATGCCGACTTGGAATCCTCATAAGAAGAAGAGATCAAACTA TGCGGCTCCAAGTTCATCATCCGATTCCAGAGGACAAAATTCCGGTGGAAGAGGTAACAGATGGACCTGA
AA sequence Show only first row Show all	>Lus10034064 pacid=23154702 polypeptide=Lus10034064 locus=Lus10034064.g ID=Lus10034064.BGIv1.0 annot-version=v1.0 MGSQPDHLQQPTPDPAPSPDHVQQTKSLISALNFVSRNLPLPPDVLQTVSSIYLAGPDEDNAPTEDDNAAEGPEISVKGDLMAEFEDALSNQRSKFMSGS VLADSRMKRYQSTVEHRVNELEELPSTRGEDVQAKCLLELYGLKLGELQRKVRSEVNSEYLLRLSCACPDKQLFDWSMMRLRRPMYGVGDAFATEADDQF RKKRDAERLSRLEEQERNNFETRKRKFFAEVLNALREFQLQNQASLKRRKQRNDSILGWHTKQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTM LLSETNKLLVSLGAAVQRQKDNADGIEPLPDSEAESGEVDGDSDNGEDTADLLEGQRQYNSAIHSIEEKVIEQPSILKGGQLRPYQVEGLQWMVSLFNNN LNGILADEMGLGKTIQTISLIAYLKEKKGIAGPHIIMAPKAVLPNWINEFATWLPKDVIKAVHYDGRADQRKDLRDHLSKEGFDVLITHYDLLMKDKSFL KKINWVYLIVDEGHRLKNHECALSRTLESGFQFQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVAKFEEWFNLPFADRGDISLTEEEQLLVIRRLHHV IRPFILRRKKDEVEKFLPSKSQVILKCDMSSWQKVYYQQITEMGRVGLQNGSGKSKSLQNLTMQLRKCCNHPYLFVGDDYNMNQIDEITRASGKFELLDR LLPKLRATGHRILLFSQMTKLMNVLEIYLRLHDYKYLRLDGTTKTEERGIKLKQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIMFDSDWNPQMDQQAE DRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRRELLEEIMRKGSSSLGTDVPSEKEINRLAARSLEELRLFEKLDE ERRRKENYRPRLMEEKEVPEWAYQNISKDDKASKGFDQTAVLGKRKRKDVSYADTLTDRQFSKAVENGDYIATLSARRIDTPPHRAAAMPKFSEGNQLVS NGASQAAESMNETMSEGTSEEIYMSAPRRMNPAVDSGMDKYELQSSSVMWSGQMPTWNPHKKKRSNYAAPSSSSDSRGQNSGGRGNRWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10010522 [exp]	1.0	0.9550
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10029806 [exp]	2.0	0.9293
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	6.0	0.9197
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	6.0	0.9369
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	6.5	0.9210
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	6.9	0.9238
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	8.1	0.9282
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	8.3	0.9349
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	9.2	0.9187
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	9.5	0.9043

Compare expression of checked genes

Lus10034064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.