Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56090 506 / 3e-180 COX15 cytochrome c oxidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033332 [exp] 569 / 0 AT5G56090 655 / 0.0 cytochrome c oxidase 15 (.1) Lus10034789 [exp] 561 / 0 AT5G56090 647 / 0.0 cytochrome c oxidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166800 [exp] 525 / 0 AT5G56090 667 / 0.0 cytochrome c oxidase 15 (.1) Potri.001G469701 [exp] 269 / 2e-89 AT5G56090 430 / 9e-151 cytochrome c oxidase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF02628 [flax] [poplar] COX15-CtaA Cytochrome oxidase assembly protein
Representative CDS sequence Show only first row Show all	>Lus10034065 pacid=23154767 polypeptide=Lus10034065 locus=Lus10034065.g ID=Lus10034065.BGIv1.0 annot-version=v1.0 ATGGTGATTCTCGGTGGTGTCACTAGGCTCACCCGTTCTGGTCTTTCCATGACTGATCGGAAATTCACCGACCAACTCCCTCCTCTTTCCGATGAGGAAT GGTCCAAGGAGTTTGAAAAGTACAAGGACTCGCCTGAATACAAACGTGTGAACAAAGGGATGAACCTTGATGATTTCAAATTTATTTATTGGATGGAGTA TGGTCATCGTATGTGGGGAAGGGCTCTTTTGGCTGATCTTGGACTAAGACTATGTGGTCTCTTTGCTCTTGGTGCTGGGCAGGGTATGATTGGTTGGTGG ATGGTCAAGAGTGGTTTAGAGGAGCCAGCATCTGAATACATAGAGTCAAGAGTTAGTCCTTACCGTCTAGCAGCTCATCTTACTTCAGCATTTGCTATTT ATACTGGCCTTTTCTGGACTGCACTTTCTGTTTTGATGCCTGAACCACCTGCAGAATCGATTACTTGGGTTCGAGGGGCTGCAAAAGTGAAGAGACTTGC TCTTCCTGTAAGCGTTATTGTTGGTATTACTGCCATCTCAGGTGCTTTAGTGGCTGGCAATGATGCTGGACGTGCATATAACACTTTCCCCAAAATGGGT GAAAACTGGATCCCTTATGGCATATTTGAGATGAAGCCATTAATTCGAAACTTCTTTGAGAACACGGCAACAGTTCAGCTGGACCATCGCATACTTGCAA CAACAACTTTAGCTTCAATTGGGGCTATGTGGTGGTTCACAAGAAAGATAGATGTACACCCTGCCGTAAGATCTTTGATCGGAAGCACCGTTGGCATGGC TATTCTTCAGGTAAGCTTAGGGATATCAACGCTTCTGTCGTACGTACCTGTTTCACTTGGCACGGCACATCAAGCTGGAGCACTAACACTTATAACGATT ATGATGCTGCTCAATCACACGATGCGAAGGCCTTCTTTGCCCCTTGTAAAGTCATTGCCTCAAGTTGTAAAGCCACTTTATTGA
AA sequence Show only first row Show all	>Lus10034065 pacid=23154767 polypeptide=Lus10034065 locus=Lus10034065.g ID=Lus10034065.BGIv1.0 annot-version=v1.0 MVILGGVTRLTRSGLSMTDRKFTDQLPPLSDEEWSKEFEKYKDSPEYKRVNKGMNLDDFKFIYWMEYGHRMWGRALLADLGLRLCGLFALGAGQGMIGWW MVKSGLEEPASEYIESRVSPYRLAAHLTSAFAIYTGLFWTALSVLMPEPPAESITWVRGAAKVKRLALPVSVIVGITAISGALVAGNDAGRAYNTFPKMG ENWIPYGIFEMKPLIRNFFENTATVQLDHRILATTTLASIGAMWWFTRKIDVHPAVRSLIGSTVGMAILQVSLGISTLLSYVPVSLGTAHQAGALTLITI MMLLNHTMRRPSLPLVKSLPQVVKPLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	0	1
AT5G16610			unknown protein		Lus10010975 [exp]	3.3	0.7487
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	3.7	0.7055
AT5G22120			unknown protein		Lus10004788 [exp]	8.5	0.7185
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Lus10027766 [exp]	10.5	0.6949
					Lus10033943 [exp]	15.6	0.7203
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	15.9	0.7463
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	19.5	0.7116
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	21.2	0.6660
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	21.6	0.6875
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	24.2	0.6905

Compare expression of checked genes

Lus10034065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.