Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 173 / 1e-46 GTE7 global transcription factor group E7 (.1) AT5G10550 157 / 7e-41 GTE2 global transcription factor group E2 (.1) AT1G73150 147 / 1e-38 GTE3 global transcription factor group E3 (.1) AT1G17790 146 / 8e-38 DNA-binding bromodomain-containing protein (.1) AT5G14270 127 / 7e-31 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G06230 123 / 3e-29 GTE4 global transcription factor group E4 (.1.2.3) AT3G27260 120 / 2e-28 GTE8 global transcription factor group E8 (.1.2) AT5G63320 116 / 1e-27 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 109 / 7e-25 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT2G34900 103 / 1e-23 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007096 [exp] 863 / 0 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 502 / 1e-176 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10010524 [exp] 365 / 5e-124 AT5G65630 110 / 1e-27 global transcription factor group E7 (.1) Lus10010525 [exp] 305 / 3e-100 AT5G65630 188 / 7e-56 global transcription factor group E7 (.1) Lus10020471 [exp] 152 / 8e-44 AT5G10550 49 / 8e-08 global transcription factor group E2 (.1) Lus10039630 [exp] 145 / 9e-37 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10033623 [exp] 142 / 2e-35 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 142 / 2e-35 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 142 / 2e-35 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 536 / 0 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 530 / 0 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.013G118900 [exp] 221 / 2e-63 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 216 / 2e-61 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 144 / 4e-37 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.015G091800 [exp] 132 / 4e-32 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 128 / 5e-32 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.012G094300 [exp] 127 / 2e-30 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 124 / 1e-29 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 111 / 1e-25 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10034067 pacid=23154745 polypeptide=Lus10034067 locus=Lus10034067.g ID=Lus10034067.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTGTGTTAGCTAATTTGAGCGAACCGAGCTGGATCCAGGCACAGCCGGCCGGCGGTGCCAAGCTAATGGGCAAATACCCCTTCTCCAACT CCAACGCTAGCAACCCTAACCCTCAATTCTCTAAGAAACGGCAGTTTCAGGCGTTGCCTTTCGTAGATGTTGATGAATCTCCGGCGTTCGCGGCAGCTGA CGACGCGTCATCAATTAATCGGAGACCTAACGATTTCAACACTGGGCGATACGTCACCTTCAATGTCGCATCGTATTCAAAGAAGGAGCTTGTGGAGCTG AAGGATCGATTGGTTGTCGAGCTTGAGCAGATCCGGCAATTGAAGAGCCGCATCAATTCTTCCTCCGACTTCCAGATCAGATCCGGCTCAAAGTTTCATA ACAAGAAACCAATTGGTGGGCCGAACAGCAACAAGAAGATACTGGGAAACAAGCGGCCGTTCCCTGCTACGAATTCGAGATTCGGGGTTCAGGAATTGAA GAGATCACACCACCATGATAACTCGCAATTGATGAAGAAGTGTAGCCAGATCTTGTCCAAATTGATGAAGCACAAGTACGGGCACATCTTCAACGTTCCG GTAGACGTCGTGGGATTGCAGCTTCACGATTATAATGACATAATTAAACAGCCGATGGATTTGGGTACCGTGAGGAAGAAATTTGGGAAGAATCTCTATG ATTCGCCTCATGATTTTGCCGCAGACGTGAGATTGACCTTCAATAATGCCATGAGGTACAATCCCAAAGGTCACGAGGTTTACGCAATTGCAGAGGATTT TCTCTCTAGATTCGAAGGACTGTTCCAACCTATCAAGGATATGCTGGGTGATGAGGAGATCCACGAAGAAGAAGAGCTCGAGCTCGCTCAAGAAGTACAG GACAGTTCTTGGGATCATCATAACCATCACAGGGGAATGATTGAGACTGAAAGTGTAGTACCACCGAAAGAGCAAGGGGCAATGATGCAAGTTATGGCAA AATCCGAGCAAATTGGTACAAACTCGATTCCCCCACCACCTACTTCTGCATCCAGTCAAAACCCTAATCCTCCTCAATCAACATCTCAACAATTGCCTGT GAGGACGCCATCTCCGAGGCGTGCTCCACAAGTGAAGCCTGTGAAGCTTCCGAAGCCAAAGGCAAAAGATCCTAATAAGAGGGAGATGAGTCTGGAAGAG AAGCATAAATTAGGAGTAGGTCTGCAGAGCATGCCCCCTGAGAAGATGGAGCAGGTGGTTCAAATAATAAGGAAGAGGAATGGGCATTTGAGGCAGGACG GGGATGAGATTGAGCTTGATATTGAAGCAGTAGACACAGAGACTCTTTGGGAACTTGATCGATTCGTCACTAATTACAAAAAAATGGTAAGCAAGCTTAG GCGTCAAGCACTGATTCTCCCTAACATTGGGGGAACTGAAGGCAACAAGGATGTGCCCGCTAGTGAGAGAATTGATGTTGTAACCGAGTCGAAGAAGCCG AAGAAAGGAGGTGATGCAGGGGAAGAAGATGTGGACATTGGCGATGAAATGCCAATGAGCAGCTTTCCGCCAGTGGAGATCGAGAAGGACAACAACAACG GTGGTCATGCGAGCAGCAGTTCTAGCAGCTCGAGTAGTATAGGACCAACCATGTTAAACCAAAATGCGTATGGAGGTCGGCGGGGCAGATCCTGGATTTG TGTTGCAAATTCAATTGTGCTGGTGGCCGATTGA
AA sequence Show only first row Show all	>Lus10034067 pacid=23154745 polypeptide=Lus10034067 locus=Lus10034067.g ID=Lus10034067.BGIv1.0 annot-version=v1.0 MASAVLANLSEPSWIQAQPAGGAKLMGKYPFSNSNASNPNPQFSKKRQFQALPFVDVDESPAFAAADDASSINRRPNDFNTGRYVTFNVASYSKKELVEL KDRLVVELEQIRQLKSRINSSSDFQIRSGSKFHNKKPIGGPNSNKKILGNKRPFPATNSRFGVQELKRSHHHDNSQLMKKCSQILSKLMKHKYGHIFNVP VDVVGLQLHDYNDIIKQPMDLGTVRKKFGKNLYDSPHDFAADVRLTFNNAMRYNPKGHEVYAIAEDFLSRFEGLFQPIKDMLGDEEIHEEEELELAQEVQ DSSWDHHNHHRGMIETESVVPPKEQGAMMQVMAKSEQIGTNSIPPPPTSASSQNPNPPQSTSQQLPVRTPSPRRAPQVKPVKLPKPKAKDPNKREMSLEE KHKLGVGLQSMPPEKMEQVVQIIRKRNGHLRQDGDEIELDIEAVDTETLWELDRFVTNYKKMVSKLRRQALILPNIGGTEGNKDVPASERIDVVTESKKP KKGGDAGEEDVDIGDEMPMSSFPPVEIEKDNNNGGHASSSSSSSSSIGPTMLNQNAYGGRRGRSWICVANSIVLVAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06230		GTE4	global transcription factor gr...		Lus10034067 [exp]	0	1
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	3.7	0.8509
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	4.5	0.8431
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	9.8	0.8523
AT3G15470			Transducin/WD40 repeat-like su...		Lus10039933 [exp]	10.7	0.8176
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	13.0	0.8334
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	14.1	0.7882
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	16.5	0.8332
AT4G37820			unknown protein		Lus10019253 [exp]	16.5	0.8229
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10021582 [exp]	17.4	0.8212
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10039075 [exp]	17.5	0.8229

Compare expression of checked genes

Lus10034067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.