Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47480 172 / 3e-50 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 159 / 4e-45 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 154 / 5e-43 ATCXE13 carboxyesterase 13 (.1) AT2G03550 152 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 148 / 5e-41 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 142 / 7e-39 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 141 / 5e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 129 / 4e-34 ATCXE5 carboxyesterase 5 (.1) AT5G16080 102 / 5e-24 ATCXE17 carboxyesterase 17 (.1) AT5G06570 89 / 2e-19 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014036 [exp] 197 / 1e-59 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021743 [exp] 194 / 1e-58 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10027909 [exp] 190 / 6e-57 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10012073 [exp] 189 / 2e-56 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 178 / 2e-52 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 177 / 7e-52 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10014033 [exp] 172 / 2e-49 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10021745 [exp] 168 / 1e-48 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 151 / 1e-42 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104300 [exp] 207 / 9e-64 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.004G142400 [exp] 199 / 2e-60 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 195 / 9e-59 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 187 / 8e-56 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 187 / 1e-55 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 186 / 1e-55 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 181 / 2e-53 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.014G032600 [exp] 179 / 2e-52 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104400 [exp] 177 / 4e-52 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.014G032800 [exp] 176 / 2e-51 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034068 pacid=23154646 polypeptide=Lus10034068 locus=Lus10034068.g ID=Lus10034068.BGIv1.0 annot-version=v1.0 ATGAAGAGCAATGGAGGAGGGCTCTCACAGAGGGAGGCGGAGAGCGAGGCAATGCTAATGGCTATCGGGTGGGTGCTGGCAATCAATGGAAGCTATGTGG ACCTCTCAGAGTTTGGTACTACTATTGTAGCTTGTCGACGACAACAGTATCAACGACCTCATTACACGGTGTCTTGGGTTAGGAGAAATAGAAATGGAAT GACGCACGAGTTAGCTCGTCGTTCTCCTTATCTTGTGTCCATTTTTCTAGGTGTGACACCTCCTAATTTGTGTGATTCGTTTGTAAAAGATATTTGTACG AGTACACAGACGGCTCCATGGAACACATATTCGGGTTCCACATTGTCCCACCAAATCTCCGACGACCCCAAAGTCTCCGCCCGCCTCTACCTCCCGAAAT CGATACCCGACGACGACAACAAGCTGCCGATCTTGGTCTACTTCCACGGCGGCGCGTCCTGCCTAGAATCAGCCTTCTCCTCCCTTCACCTAAACTACCT CAATTCATTATCCGCAGAGGCTCACGCGGTCGTTGTGTCCGTGGAGTACAGGCTGGCGCCAGAGCACACTCTCCCTGCTGCTTATGATGATTCCTGGGCC GCCCTTCAATGGGTCGTTAGTTCTCATCGCTCCGACGAAGACCGGAAGGAGCAGTGGTTGTCCGATAACGGCGATTTTGACCGGTTGTTTGTCGGCGGGG ACAGTGCCGGCGTGAACATTTGTTCACAATTTGGCAGTCAAAGCAGGGCAACAAGGGTTGTTGAAGGGGTGGTGAAGTATTTTAACAAAATTGTAAAATT ACTAGATTGGACAGGCGGAGTGAAGCTACGAGGAGTGTTCCTATCGCACCCGTACTTCTGGGGGTCAAAGCCGATAGGAAAGGAGCCAGAAGAAAATCAC GAGAATGCCTCTGCTGCAGCTGCTTCGTATACTCCTGGCGGGTTGGACAATGTGATGTTCAATCCGGCGGCAGAGGGAGTGCCGGGGCTGGGCGGGCTAG GGTGCGAGAAACTGCTGGTATGCGTGGCCGGGAAAGACGATCTGAGGGAGAGAGGGGTTTGGTATTGTGAATTGGTGAAGGAGAGTGGGTGGAAAGGCCA AGTGGAGTTGTATGAAGTTGAAGATGAGGGCCACGCTTTCCATTTGTTTAATCAGGGGACTGAGAAGGATAATCTTATGATCAAACGCCTCGCTTCCTTT CTTAAAGACTGGTTAAGCTCAGTTCATCTTTATATTAGTTGTCTTCAAGTTTGGCCATTAATACTTTGTTCGTAG
AA sequence Show only first row Show all	>Lus10034068 pacid=23154646 polypeptide=Lus10034068 locus=Lus10034068.g ID=Lus10034068.BGIv1.0 annot-version=v1.0 MKSNGGGLSQREAESEAMLMAIGWVLAINGSYVDLSEFGTTIVACRRQQYQRPHYTVSWVRRNRNGMTHELARRSPYLVSIFLGVTPPNLCDSFVKDICT STQTAPWNTYSGSTLSHQISDDPKVSARLYLPKSIPDDDNKLPILVYFHGGASCLESAFSSLHLNYLNSLSAEAHAVVVSVEYRLAPEHTLPAAYDDSWA ALQWVVSSHRSDEDRKEQWLSDNGDFDRLFVGGDSAGVNICSQFGSQSRATRVVEGVVKYFNKIVKLLDWTGGVKLRGVFLSHPYFWGSKPIGKEPEENH ENASAAAASYTPGGLDNVMFNPAAEGVPGLGGLGCEKLLVCVAGKDDLRERGVWYCELVKESGWKGQVELYEVEDEGHAFHLFNQGTEKDNLMIKRLASF LKDWLSSVHLYISCLQVWPLILCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10027524 [exp]	1.4	0.8499
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	4.5	0.8157
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	5.2	0.7876
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	7.9	0.8139
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	9.4	0.7580
AT1G32920			unknown protein		Lus10001526 [exp]	11.0	0.8019
AT1G76070			unknown protein		Lus10034552 [exp]	11.7	0.7915
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	12.3	0.8091
					Lus10008536 [exp]	15.5	0.7534
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	16.3	0.7734

Compare expression of checked genes

Lus10034068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.