Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 1070 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 797 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 92 / 3e-19 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 85 / 5e-17 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G03740 79 / 3e-15 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G39760 72 / 7e-13 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G43700 71 / 9e-13 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT2G44900 71 / 3e-12 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT5G67340 70 / 4e-12 ARM repeat superfamily protein (.1) AT3G60350 69 / 1e-11 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010527 [exp] 1334 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 800 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 794 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10027086 [exp] 101 / 7e-22 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041235 [exp] 89 / 3e-19 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 89 / 3e-18 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10003365 [exp] 82 / 8e-16 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 82 / 8e-16 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10042337 [exp] 68 / 8e-12 AT5G41310 96 / 1e-21 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150100 [exp] 1152 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 996 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 974 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 961 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G184200 [exp] 87 / 1e-18 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 86 / 1e-17 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 86 / 1e-17 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 85 / 3e-17 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G200700 [exp] 81 / 6e-16 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.019G039500 [exp] 77 / 1e-14 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10034070 pacid=23154807 polypeptide=Lus10034070 locus=Lus10034070.g ID=Lus10034070.BGIv1.0 annot-version=v1.0 ATGTTGATGGAGCTGCAGAAGCGCAAAGATCAAGGCCTCCCGGAGAGGAAGGGGCAGAAGCGGAAACTGGATGAGGAAATCAAAGACGAGCAGCCGGGGA TCTCGCCGTCGGCGGCCGCTTGCTCCGATGCTCGCCATGCTATCCTCTCTGAGGTTGTTGTTCAGGTCAATATTCTCGACTCCGCCTTCTCCTGGCTAGA AGCAGATCGATCCGCTGCTAAACGCGCTACGCACGTGCTTGCTGACCTTGCTAAAAACGATGAGGTAGTTAACGTGATAGTAGAAGGAGGTGCTGTTCCG GCTCTTGTTAAGCATCTTCAAGCCCCGACATCAATGGAAATTGATGGTAACTTGAAGCCTTTTGAGCATGAGGTTGAGAAGGGCAGTGCGTTTGCGCTGG GACTGCTAGCAGTGAAGCCAGAGCATCAACAACTCATAGTTGACAATGGAGCTTTACCATGTTTGGTGGACCTGTTGAAGAGGCATACCGAGGGAACTGC TCGAGCTGTGACTAGTGTTATCAGAAGAGCAGCTGACGCAATAACCAACCTTGCACATGAGAACAGCAACATCAAAACTCGTGTTAGGATGGAAGGAGGG ATCCCTCCCCTTGTCGATTTGCTAGAATTTGCCGACACAAAGGTGCAACGGGCAGCTGCCGGGGCTCTCCGAACTTTAGCATTCAAAAATGATGAGAACA AAAATCAGATTGTTGAATGCAATGCACTTCCTACTCTCATTTTAATGCTACGGTCTGAGGATGCAGCTATACATTATGAAGCGGTCGGTGTGATTGGGAA TTTGGTGCATTCATCCCCTAACATAAAGAAAGAAGTCCTTGCTGCCGGCGCCTTGCAACCCGTCATTGGTCTACTTAGGTGGGTATATCTTTGCCAGGCT TTGTTTGTAACTGATAGTAGCTCCTGCTGCTCAGAGAGCCAAAGAGAGGCTGCTTTGCTACTTGGCCAATTTGCCGCTACCGATTCAGATTGTAAGGTTC ACATTGTACAAAGGGGTGCGGTGAGACCTTTAATTGAGATGCTCCAGTCTTCTGATGTGCAGCTCCGGGAAATGTCAGCCTTTGCATTGGGGAGGTTGGC TCAGGATCCACACAACCAAGCTGGTATAGCTCACAACGGTGGGTTAGTGCCATTACTGAAGCTCCTGGATTCGAAAAATGGATCTCTGCAACACAATGCT GCATTTGCGCTATATGGTCTTGCAGATAACGAGGATAATGTTTCTGATTTCATTAGAGTTGGAGGGGTTCAGAAGCTTCAATATGGAGAGTTCATTGTTC AAGCAACAAAAGATTGTGTTGCAAAAACATTGAAGAGATTAGAGGAGAAGATTCATGGACCAGTCTTGAAGCATTTGCTTTATCAGATCCGTGTAGCCGA AAAAGCTGTACAACGACGTGCCGCTTTGGCTCTTGCACATCTTTGTGCTCCTGATGATCAACGACTTATTTTCATAGACAACAGTGGACTGGAGTTATTG TTAGGGCTTCTTGGTTCTTCAAACACGAAGCAACAACTTGATGGAGCTATTGCTCTGTATAAGTTGGCCAATAAAGCAATGACACTTTCTCCTGTGGATG CAGCTCCTCCTTCTCCGACTCCACAGGTTTATTTGGGGGAGCAGTATGTGAACAATGCTACGTTATCTGATGTAACCTTCCTCGTTGAAGGGAGACGGTT CTATGCACACAGAATCTGCTTGCTGGCTTCCTCTGATGCATTTCGAGCAATGTTTGATGGGGGTTACCGGGAGAAGGATGCTAGGGATATTGAAATTCCG AACATCAGATGGGAAGTGTTTGAGTTGATGATGAGATTTATATACACGGGATCAGTTGATATTACATTAGATGTTGCCCAAGATCTCCTCAGTGCTGCTG ATCAGTATCTCCTGGAGGCACTTAAGCGACTCTGCGAGTATACGATAGCACAGGACATATCTCTGGACAATGTTGCGAGCATGTACGAACTCTCAGAATC CTTCCATGCCATATCACTACGGCACACATGCATTTTGTTTATCTTGGAGCATTTTGATAAATTGAGTGCCAAGCCCAGGCACTCCTATTTGGTGCAGCGG ATAATACCAGAAATACGGAATTACTTTGGGAAGACGCTGATGAAAGCTAACCCACATAATAACAGGTTACAAGTTCCAAAATCCAAAGGAACAGGGATAT GGTTCACAAGTTGGGTTAGAGAGCAGGAAGATCCAGATCAGCGGGTTCCAGTTGGGAACATGAAGTATGAAATGGAGTGCAGGGATGTTGGGGCACGTGA TGTCGAGGAGTCAGAGAGCATCAGGTTTCATTTACGTAGATGTATTGTCCCTGTTATTAAAGCAGCCCTACGCCGCCAGCTGGGACGTACAGTTAGTTTG GAGGATGCAGAGATCGATCGTTACAGTATTGAACTCTGCAAAGGAGTATGTTTGATGACGTACCTCAAGCTACGCTCTCTGTGTTCTATGGCTGATTATG AAACCATGCTCAAATACGCCAAGAACCCCAACGACCTTCCGAGTCTTTTTGAGGTTCTCACACCCTACGCACTTGCCATCTCACAACTCGGCATTCTTAA GGTAACCACTCACCCGCAATTTATTCCTTCACTAATCCCAACCGTTGAAGTTTGA
AA sequence Show only first row Show all	>Lus10034070 pacid=23154807 polypeptide=Lus10034070 locus=Lus10034070.g ID=Lus10034070.BGIv1.0 annot-version=v1.0 MLMELQKRKDQGLPERKGQKRKLDEEIKDEQPGISPSAAACSDARHAILSEVVVQVNILDSAFSWLEADRSAAKRATHVLADLAKNDEVVNVIVEGGAVP ALVKHLQAPTSMEIDGNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALPCLVDLLKRHTEGTARAVTSVIRRAADAITNLAHENSNIKTRVRMEGG IPPLVDLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLRWVYLCQA LFVTDSSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA AFALYGLADNEDNVSDFIRVGGVQKLQYGEFIVQATKDCVAKTLKRLEEKIHGPVLKHLLYQIRVAEKAVQRRAALALAHLCAPDDQRLIFIDNSGLELL LGLLGSSNTKQQLDGAIALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP NIRWEVFELMMRFIYTGSVDITLDVAQDLLSAADQYLLEALKRLCEYTIAQDISLDNVASMYELSESFHAISLRHTCILFILEHFDKLSAKPRHSYLVQR IIPEIRNYFGKTLMKANPHNNRLQVPKSKGTGIWFTSWVREQEDPDQRVPVGNMKYEMECRDVGARDVEESESIRFHLRRCIVPVIKAALRRQLGRTVSL EDAEIDRYSIELCKGVCLMTYLKLRSLCSMADYETMLKYAKNPNDLPSLFEVLTPYALAISQLGILKVTTHPQFIPSLIPTVEV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10010527 [exp]	1.0	0.9311
AT3G04490			unknown protein		Lus10022024 [exp]	1.4	0.9241
AT1G71820		SEC6	SEC6 (.1.2)		Lus10020177 [exp]	5.3	0.8809
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	8.9	0.8789
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	9.4	0.8888
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	11.5	0.9016
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	12.4	0.8930
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	12.6	0.8877
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	14.0	0.8702
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	14.5	0.9119

Compare expression of checked genes

Lus10034070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.