Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67260 97 / 4e-22 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 87 / 8e-19 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT4G18390 81 / 2e-16 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G53230 81 / 2e-16 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G18550 78 / 2e-15 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT2G31070 77 / 3e-15 TCP TCP10 TCP domain protein 10 (.1) AT3G15030 77 / 3e-15 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT1G30210 76 / 3e-15 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT5G60970 72 / 2e-13 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT3G02150 70 / 3e-13 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003078 [exp] 239 / 1e-75 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10035055 [exp] 88 / 4e-19 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 87 / 6e-19 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10000463 [exp] 80 / 3e-16 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10042962 [exp] 79 / 2e-15 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10023297 [exp] 77 / 6e-15 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10032465 [exp] 77 / 6e-15 AT1G68800 92 / 2e-20 BRANCHED 2, TCP domain protein 12 (.1) Lus10038512 [exp] 76 / 2e-14 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 73 / 7e-14 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112000 [exp] 93 / 2e-20 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.010G130200 [exp] 88 / 1e-18 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 85 / 1e-17 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.013G119400 [exp] 82 / 4e-17 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.015G050500 [exp] 80 / 5e-16 AT1G68800 86 / 2e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.019G091300 [exp] 78 / 9e-16 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G083100 [exp] 78 / 2e-15 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.012G059900 [exp] 77 / 3e-15 AT1G68800 84 / 6e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.011G096600 [exp] 77 / 4e-15 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.001G375800 [exp] 77 / 4e-15 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10034072 pacid=23154642 polypeptide=Lus10034072 locus=Lus10034072.g ID=Lus10034072.BGIv1.0 annot-version=v1.0 ATGTTTTCATCGAGTGGTGATGGGGATGTGAATAACAATAACAATAATAGCAGTAGTCCATTTCGGCAGTTGTTGCAGTCTGGTTGTTCATCCACAATGT CGGATGATCAAAGCCGGAGCCGCGGCCTTTCTTCTTCTTCACCCTACTTGATGATGTTTGACGACCCTGAAATCACCACCACTGATCAAAACACTTATCC TTATCCTCCAAACAACAACCATGGCCAGTTAATGACTTTGCCATTCTTGCTCCCGACATACCCTTATTATAACAACAACAACATTTATCCACACCTTCCT CCACCTCCTCCTCCTTCAGTGATCAGCTGCAATTATGATTGCAATAATAATAATAATCCAAATGAGATGTTGACGATGATGATGATGATGAGTGGTGGTG GTAGTAGTAGCAATAGTACTAGTACGATGACGATGACAACGAAGAAGAAGAAGGAGAGGCACAGCAAGATAGAGACAGCATCAGGGGTGAGAGACAGGAG GGTAAGGCTGTCAATTGCTACTTCCAGAAAATTCTTTGATTTGCAGGACATGCTTGGTTTTGACAAGCCCTCCAAGACACTTGACTGGCTCCTCTCTCAT TCCGAGCCCGCCATCCACCGCCTCCAACAACTCCAACTCGAACAACATCCCACTGGGGACATCATGGAGTTGGAGAACGAGGATGATGAGGAGGATGGCG ATGATGATCATGACCAAGAACACGAGCCGCTGCTGCTAAACCAGCACCTGCAGGGAAGGGCAAGGGAGACAAGAACCAAAGACAAACAACAACAACAACA ACAACAACAACAACAAGAACCATTTGGCATTGGAAGAGTAATTTCCAACTCCTACAACTCCCTATTCACTACTGCTACTACTACTCCTCCGGCTTCAACG CAGATCGATTATGAGTCATTCACGTTGATGAAGTGGCACCTTAAGCACCCTGAATCATCTTTAACAACATTAGCAACAAAAAACCATGCCATCCCATCAC CCATTTTCCCTCATCGTCATCATCATCATCATCATCAGGACAGTGCCAATTGTACTACTACTGCTTCTACTTGGGATATCAACGCTTCAACTGGTAATTA TATTATATTTAGCGTTTCATCCGATCCTAAACTGCATAACTGTTACTCATTTGTTTCTACCAGCTTACTCGAGTTGTTGGGATCGGAGGGGGTTCAAATT GGTTTTATATGCACTTACGCTACTACTTATCGAATTGGATATGCAGGGTTGCAGCTGAATGGGAGATTCTGGGAGGAAAGAGATCACCGCAACTTATAA
AA sequence Show only first row Show all	>Lus10034072 pacid=23154642 polypeptide=Lus10034072 locus=Lus10034072.g ID=Lus10034072.BGIv1.0 annot-version=v1.0 MFSSSGDGDVNNNNNNSSSPFRQLLQSGCSSTMSDDQSRSRGLSSSSPYLMMFDDPEITTTDQNTYPYPPNNNHGQLMTLPFLLPTYPYYNNNNIYPHLP PPPPPSVISCNYDCNNNNNPNEMLTMMMMMSGGGSSSNSTSTMTMTTKKKKERHSKIETASGVRDRRVRLSIATSRKFFDLQDMLGFDKPSKTLDWLLSH SEPAIHRLQQLQLEQHPTGDIMELENEDDEEDGDDDHDQEHEPLLLNQHLQGRARETRTKDKQQQQQQQQQQEPFGIGRVISNSYNSLFTTATTTPPAST QIDYESFTLMKWHLKHPESSLTTLATKNHAIPSPIFPHRHHHHHHQDSANCTTTASTWDINASTGNYIIFSVSSDPKLHNCYSFVSTSLLELLGSEGVQI GFICTYATTYRIGYAGLQLNGRFWEERDHRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	0	1
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	1.0	0.9679
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	2.0	0.9579
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	2.4	0.9467
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10027459 [exp]	2.4	0.9421
					Lus10026122 [exp]	4.5	0.9186
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	5.2	0.9385
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	6.3	0.9398
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	6.7	0.9452
AT1G15260			unknown protein		Lus10011448 [exp]	6.9	0.9462
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	7.0	0.9421

Compare expression of checked genes

Lus10034072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.