Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38650 197 / 3e-66 Proteasome maturation factor UMP1 (.1) AT1G67250 197 / 4e-66 Proteasome maturation factor UMP1 (.1) AT5G38660 198 / 5e-63 APE1 acclimation of photosynthesis to environment (.1.2) AT1G62920 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003077 [exp] 265 / 4e-93 AT5G38660 193 / 1e-64 acclimation of photosynthesis to environment (.1.2) Lus10005377 [exp] 60 / 2e-12 AT5G38650 54 / 2e-10 Proteasome maturation factor UMP1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111900 [exp] 185 / 2e-61 AT1G67250 187 / 2e-62 Proteasome maturation factor UMP1 (.1) Potri.006G249600 [exp] 183 / 2e-60 AT1G67250 186 / 7e-62 Proteasome maturation factor UMP1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05348 [flax] [poplar] UMP1 Proteasome maturation factor UMP1
Representative CDS sequence Show only first row Show all	>Lus10034073 pacid=23154896 polypeptide=Lus10034073 locus=Lus10034073.g ID=Lus10034073.BGIv1.0 annot-version=v1.0 ATGGAAGGAGCACCCAAGACGATAGCGCACGAAGCCGGAGCAATCGAGAAGGATCCACTTCGATTCGGCCTCCATGGCGTTAAAAGCGACCTCGTCGGAT CTCACCCTCTCCAAGCTTCATATGGATCCACTATTAAAACTCACGAAGACATGAAGAGGAGAGTCCTTGCAAACACTTACGGATTTGCCTTCCCTGTGAA GATGGACCTGGAAAGACAAATTCTTACCCGATTTCAGAGACCAGCAGGTGCTATTCCTTCTTCAATGCTTGGATTGGAAGCCATGACTGGTAGCTTGGAT GATTTTGGTTTCGAGGATTATCTTAATGATCCTCGTGAATCTGAAGTCTATCGACCAGTGGACATGCACCATGGGTTGGAGGTTCACCTGGCACTGTCCA AGGGACCGGTTCAAGGTTCTTTCATCTGA
AA sequence Show only first row Show all	>Lus10034073 pacid=23154896 polypeptide=Lus10034073 locus=Lus10034073.g ID=Lus10034073.BGIv1.0 annot-version=v1.0 MEGAPKTIAHEAGAIEKDPLRFGLHGVKSDLVGSHPLQASYGSTIKTHEDMKRRVLANTYGFAFPVKMDLERQILTRFQRPAGAIPSSMLGLEAMTGSLD DFGFEDYLNDPRESEVYRPVDMHHGLEVHLALSKGPVQGSFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	1.0	0.9273
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	4.2	0.9215
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	5.2	0.9185
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	6.3	0.9063
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	7.3	0.8941
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	8.9	0.8926
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	8.9	0.8978
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	9.3	0.8701
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	9.7	0.8771
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	9.9	0.8911

Compare expression of checked genes

Lus10034073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.