Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38630 239 / 6e-79 ACYB-1 cytochrome B561-1 (.1) AT1G26100 139 / 7e-40 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G25570 131 / 8e-37 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G14730 105 / 4e-27 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003076 [exp] 310 / 3e-107 AT5G38630 281 / 2e-97 cytochrome B561-1 (.1) Lus10039216 [exp] 152 / 7e-45 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 149 / 9e-43 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 147 / 1e-42 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10027461 [exp] 131 / 3e-36 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10021715 [exp] 130 / 3e-36 AT1G26100 241 / 3e-80 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 102 / 1e-25 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 94 / 1e-22 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10035096 [exp] 90 / 8e-20 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111700 [exp] 265 / 5e-89 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.004G103800 [exp] 263 / 3e-88 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.008G115300 [exp] 223 / 3e-72 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.008G115200 [exp] 151 / 3e-44 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G131100 [exp] 147 / 6e-43 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 138 / 2e-39 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.012G141000 [exp] 136 / 9e-39 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G102400 [exp] 112 / 1e-29 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 112 / 1e-29 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10034074 pacid=23154792 polypeptide=Lus10034074 locus=Lus10034074.g ID=Lus10034074.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTTCCGGTGACCAGGTTCCCTATCATCGTCGTAGTGCGACTCCTTGGGGTGATCATCGCCGGCTTAGTCTTGACGTGGACGGTACATTACA GAGGAGGATTGGCTCTCGTCTCTGACAACAAGGATCTCATCTTCAATGTCCATCCAGTACTGATGGTGACCGGACTTCTACTTATGAATGGTGAAGGTAA ATTAGCTCCATCCAATGCCTGTAGTTGTGATCAAATTGATTTCAGATTTTCCCAGATGAGCCGTGCTAAGGAGATCACTTCTAGATACTTTCTCAATGGA AAAGGAAGCTTGCTGCAGTGCTTATCCCAAAGCATTCTATTCTTCTTTGATGCGCCATTATTTGAATCCGAATCTTGTATTTGGTGCTGGCTTGCTGCAG CCATGTTAGCCTACAAGACAACTCCAGGAACCAAAAACTTCAAAAAGCTCGTGCATCTCGGGCTGCAGTTTATTGCTCTCTGTTTGAGCTTGATTGGCGT GTGGGCTGCCTTGAAGTTCCATAACGATAAGGGCATTGACAACTTCTACAGTCTGCACTCGTGGCTAGGCCTAGCATGCCTTTTCCTCTTCGGCATTCAG TGGGCCGCAGGGTTTGCAACGTTTTGGTACCCAGGTGGTTCGAGAAACAGCAGAGCAACTTTAATGCCGTGGCACATCTTCTTTGGAGTTTATATATATG CGCTTGCTATTGTTACAGCTACAACAGGTCTGCTGGAGAAAGCCACATTCCTTCAAATCAACAAGGTGATAACGCGCTATTCTACGGAGGCCTTGATGGT GAACTCATTGGGAATCTTGATCGTTGTTCTTGGAGGATTCGTTGTTCTCGCAACTGTAACTCCTCCGCGTGGCAAAGGTGAAATGCCCAGGAACGCGACA GAGTAG
AA sequence Show only first row Show all	>Lus10034074 pacid=23154792 polypeptide=Lus10034074 locus=Lus10034074.g ID=Lus10034074.BGIv1.0 annot-version=v1.0 MAAVPVTRFPIIVVVRLLGVIIAGLVLTWTVHYRGGLALVSDNKDLIFNVHPVLMVTGLLLMNGEGKLAPSNACSCDQIDFRFSQMSRAKEITSRYFLNG KGSLLQCLSQSILFFFDAPLFESESCIWCWLAAAMLAYKTTPGTKNFKKLVHLGLQFIALCLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACLFLFGIQ WAAGFATFWYPGGSRNSRATLMPWHIFFGVYIYALAIVTATTGLLEKATFLQINKVITRYSTEALMVNSLGILIVVLGGFVVLATVTPPRGKGEMPRNAT E

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10034074 [exp]	0	1
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	5.5	0.7787
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	13.6	0.7656
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	24.5	0.7645
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	27.7	0.7508
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	28.4	0.7663
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	32.4	0.7384
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	35.7	0.7320
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	37.0	0.6898
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	37.5	0.7016
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	38.5	0.7538

Compare expression of checked genes

Lus10034074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.