Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67230 392 / 4e-119 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 237 / 2e-64 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 222 / 2e-59 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 81 / 4e-15 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 67 / 5e-11 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003075 [exp] 801 / 0 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 370 / 4e-111 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 325 / 4e-95 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034383 [exp] 244 / 2e-66 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034263 [exp] 244 / 2e-66 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10019257 [exp] 91 / 4e-18 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 90 / 6e-18 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111400 [exp] 471 / 3e-148 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 276 / 4e-77 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.012G034300 [exp] 122 / 7e-28 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034075 pacid=23154705 polypeptide=Lus10034075 locus=Lus10034075.g ID=Lus10034075.BGIv1.0 annot-version=v1.0 ATGTCGTCTTCTACCACACCGCAGCGGAAGACATGGTCGGTATGGTCTCTCACTCCCCGGAGAGATTTGCAGAAGTCTGGAGACCTTCAGACTCCCAATT CGAATGGTACGGCTTTCTCCAATTCTGGAGATGGGAGGGTTAGTCGTGCGCTGGATAGTGAGGATTTGGCTGCAAAGATTTCAAGGCTCGAGAATCAGTT GTTTGAATACAGCATGGAGCTTCTTCTAGTTGAAAAGCAAGAGTGGAATGCTAAATCTGACCAACTCAAACAAGCCTTAGCTGACGTGAAGAACGCACTG AAGCAGGAACAAGCCTCGCAATTAATTGTGAACTCTGATACTGAGAAGCGAGAGGAGCGCTTGAGAAAGGCACTGGGTGTCGAAAAACAGTGTGTAGCTG ATCTGGAGAAGACAGTGCAGGAGATGCGATATGAAAATGCTGAAATTAAGTTCATGGCTGACTCAAAGTTGGCTGAAGCAAATGCATTGATGAGCAGCGT TGAAGAAAAATCTCTTGAGGTTGAGGCAAAGCTTCGGTCAGTAGATGCTAGGCTGGCGGAAGTTAGCCGAAAGAGTTCAGAGCTAGAGAGGAAATCAAAG GATGTTGAAACCCGTGAAAGTGCTCTTCGAAGGGATCGTTTGTCCTTACTTGCAGAGAAAGAAGCACATGAAAACACTTTGTCTAACCAAAGAGAGGACT TGCGTGAATGGGAGAAGAAATTACAAGAGGAGGAGGAGAGGCTATCCAAGGGTCTCCGAATTGTCAACCAAAGAGAAGAAAGGGCGAACGAGAATGATAG AGTTTCTAAACTAAAGGAGAAGGATCTTGAAGAGGCACAAAAGAAGATTGATGAAGCAAATTCACTTTTGAAAAAGAAAGAAGATGACATAAATAGTCGC TTTGCTAATCTCAACCTTCGGGAAAATGAATTTGATGCTATCAAAAATAAGTTGGAGTTGAAAGAGGAGGAGTTGCGAGTCCTGGAAGAGAAGCTGAATG AAAGAGAGAAAGTTGAGATCCAGAGGCTACTTGATGAGCATACTGATTCTTTGGATGCTAAGAAATTGGAGTTTGAGATTGAAACTGAGCAGAGGAGGAA GTCCTTGGACGAGGAATTGAAAAGCAAAGTGCTTGAGGTAGAGAGAAAGGAAGCTGAAGTCAAGCATTATGAAGCAAAAGTTGCAAAAAGGGAGCTGGCG CTGGATAAGAGATTAGACAAGATTAAAGAAAAAGAAAAGGATGTTGAATCCAAATCAAAAGCTCACAAGGAAAGGGAGAAGGCCATCAAATCTGAGGAAA AGAACTTGATGGTGGCGAAAACGCAACTGCAATCTGATGAAGAAGAACTTCTAAAACTTAAAGCTGAACTAGAGAATTCAAAGGCCACTAATGAGCAGCA ACTCCTCCATATTCGCGAAGAGAGAGAGAAACTCCAAATAAGTCAAGATGAGAGGTCTGAGTACGTACGTTTGCAAGCTGAACTGAAAGAGGAAACAGAA AAGTGCAGATTTAGGGAAGAGCTACTTTTGAAGGAGGCTGAAGATTTAAAGCAGCAAAAGGAGAACTTTGAAAGGGAGTGGCTGGAATTGGATGGGAAAA AAGCTGAAATTGAAAGAGAGCTGAAAAACATGAGAGAGCAGATGGAGAAGTTTGAGAAGCAGAAGCTAATAGAGGAGGAGAAAGATGTGGCTAGAAGAGA GATGGAGGAACTGAAGAGGGAGAGATTAAGGATGGAAAAGGATAGGCAAGAGCTCGTTGAAAACAAGAAGCATCTCCAGGATCAACAGGTTGAGATACGA GAGGACATTGGTAAACTTGGAGATCTTAGCAAGAAGCTCAAGGACCACAGGGAAGTGTTCAGTAAAGAGAAAGAGCGATTCATTGCTTTTGTTGAGCAAA CCAAGGATTGTAAAAACTGTGGTGAAAAAACATCCCAGCTAGAGGCTGAGAAGTCTCCCTCTGTCAGCCACGCAGTAACTCCAGTTTCCTGGCTCCGGAA GGCCACGACAAAAATATTCCAGTTCTCCCCTTTGAAAAGGGTTGATCTTGCAACAGACTTGACCGAGGGTGCTGCACCAGATATTGATGGGACAGAACCA TCCAACAGATTGGAATTTTTCGAAGATGAGCAAGAGCTATCTTTATCATATGCAAATGATTCACTTGGAGGGGACCAGCGGGCACACTTTGGTACTGAAG AGCCTTCAGCATCGCAAGATCTTTTATCAGAGAACCAAAGCAATATTAACAGCAAGTCATTGGAACTGCAAGAAATCTCAGAGTCTTCTGATTTGAAGGG TGGGCGGGGTCGCAATAAAAGAAGAGTGAGAGTTGGTAAAACAAGATCGGTAAAAGCTGTTGTTGAAGAACGAAATGCGATTGAAGATTCTGGCCGTTTG CAATCTCGAAGTCACGAGGAGTCTAGTCTTGCAGAAACCTGGAAAACTGGGAAAAAAAGAAGCAGGATTCAAACATCTCAAACTGCGACAGTTGAACATG ATGGCAATGTGAGCGACGACCACTCTGGTAGCACAATGGCGGGTAAACGCAGGAAGACACGGCAAAAAGTTGCTAGTGTACCAGTTGCAGGAGAATCAAG ATACAATCTTCGGCGACCAAAACTGGAAGCTGTGAATGCCAAAACCTCATCTGAGCTCAACCATAAAAAAAGAAAGGAGGATGCTGATGTAATGGGTTCA AAGGACCGAGATATATCGAGAAGAAAAGCTGCTACTGTTGCAACAGCAGCAGCCGAGGGAGCTGAGGAAAATGGAGGGAGCGAACACATTGTTCCGGTAT GTCGAGTGGAGGAAGTTGCAGAAGCAGAAGAACACAACGACGGAGCAGCTACCATTCGGGATGAAAACAAGGGAAATGGAACAATGGAAATGGATGAATC TCGTCGAGAGAGTGACGACCGCAGGGATGGCGACGAAGATGACGAGGAGGAAGATGATGCAGAGTCTGAACATCCTGGTGAAGTGTCTGTAGGAAAGAAG CTGTGGACTTTTCTTACAACGTGA
AA sequence Show only first row Show all	>Lus10034075 pacid=23154705 polypeptide=Lus10034075 locus=Lus10034075.g ID=Lus10034075.BGIv1.0 annot-version=v1.0 MSSSTTPQRKTWSVWSLTPRRDLQKSGDLQTPNSNGTAFSNSGDGRVSRALDSEDLAAKISRLENQLFEYSMELLLVEKQEWNAKSDQLKQALADVKNAL KQEQASQLIVNSDTEKREERLRKALGVEKQCVADLEKTVQEMRYENAEIKFMADSKLAEANALMSSVEEKSLEVEAKLRSVDARLAEVSRKSSELERKSK DVETRESALRRDRLSLLAEKEAHENTLSNQREDLREWEKKLQEEEERLSKGLRIVNQREERANENDRVSKLKEKDLEEAQKKIDEANSLLKKKEDDINSR FANLNLRENEFDAIKNKLELKEEELRVLEEKLNEREKVEIQRLLDEHTDSLDAKKLEFEIETEQRRKSLDEELKSKVLEVERKEAEVKHYEAKVAKRELA LDKRLDKIKEKEKDVESKSKAHKEREKAIKSEEKNLMVAKTQLQSDEEELLKLKAELENSKATNEQQLLHIREEREKLQISQDERSEYVRLQAELKEETE KCRFREELLLKEAEDLKQQKENFEREWLELDGKKAEIERELKNMREQMEKFEKQKLIEEEKDVARREMEELKRERLRMEKDRQELVENKKHLQDQQVEIR EDIGKLGDLSKKLKDHREVFSKEKERFIAFVEQTKDCKNCGEKTSQLEAEKSPSVSHAVTPVSWLRKATTKIFQFSPLKRVDLATDLTEGAAPDIDGTEP SNRLEFFEDEQELSLSYANDSLGGDQRAHFGTEEPSASQDLLSENQSNINSKSLELQEISESSDLKGGRGRNKRRVRVGKTRSVKAVVEERNAIEDSGRL QSRSHEESSLAETWKTGKKRSRIQTSQTATVEHDGNVSDDHSGSTMAGKRRKTRQKVASVPVAGESRYNLRRPKLEAVNAKTSSELNHKKRKEDADVMGS KDRDISRRKAATVATAAAEGAEENGGSEHIVPVCRVEEVAEAEEHNDGAATIRDENKGNGTMEMDESRRESDDRRDGDEDDEEEDDAESEHPGEVSVGKK LWTFLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034075 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	2.0	0.8466
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	4.9	0.8114
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	5.2	0.7994
AT1G29370			Kinase-related protein of unkn...		Lus10004543 [exp]	11.3	0.8149
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	15.2	0.7644
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	17.1	0.8156
AT1G42430			unknown protein		Lus10021819 [exp]	18.2	0.7541
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Lus10015690 [exp]	20.2	0.8394
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	20.2	0.7638
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	20.7	0.7922

Compare expression of checked genes

Lus10034075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.