Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67230 567 / 0 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 336 / 1e-97 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 322 / 6e-93 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 170 / 8e-43 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 162 / 2e-40 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003074 [exp] 1635 / 0 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003075 [exp] 744 / 0 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034075 [exp] 422 / 3e-130 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034263 [exp] 403 / 2e-121 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034383 [exp] 389 / 2e-116 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10019257 [exp] 149 / 2e-36 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 128 / 8e-30 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111400 [exp] 822 / 0 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 396 / 6e-119 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.012G034300 [exp] 193 / 4e-50 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034076 pacid=23154875 polypeptide=Lus10034076 locus=Lus10034076.g ID=Lus10034076.BGIv1.0 annot-version=v1.0 ATGTCGACGCCGCAACGGGCGTCGTGGTCAGAGGCTAAAAAATCTGGGCGTGCTTTCCGTCGGACTCCTAATTCCTCAAAAATTGGCGGAGATGGGAGCC GTTTGAGAGGAAAGGCCGTGGATTTTGCCGAAGCAATGACTCCCCATGGCGTCACCTATGCTTTGGACGATGAGGATTTGCCGACCAAGGTTTCCAGGCT TGAAAATGAGTTGTATGAGTACCAGTACAATATGGGTATTCTCATCATGGAAAAGAAGGGATGGAGTGCTGAATTTGAAGAACTCAAGCAAGTATTAACT GACACGACGGATGGAATTAAACGGGAGCAAGCAGCACATTTAATGGCAATCTCTGATGCTGAGAGGCAAGAAGGGAAGTTGAGAGACACATTGGATGTTG AAAAACATTGTGCGGTCGATTTGCAGAAGGCAGTTCAGGAGATGCACGCTGAAATTGCCGAAATGCAGTCCAGGGCCGATTCAAAACTGACTGATGCCAA CGCAATGGTGAGCAGTGTTGAAGAGAAGTATCTGGATGTTGAGGCCCAACAACGAGCTATTGAAGCTAGGCTTGCAGAATTGAGCAGAAAGAGCTCAGAG CTAGCCAGGAAATCGCAGGATGTTGATTCACTAGAAAGTTCTCTTCGACTGGAGCGCTTATCAGTGGCAGCAGGGAAAGAAGCACATGCTACCACTTTTT CTAAGCAAAGAGAGGAATTTCGAGAGTGGGAAAGAAAGTTAGAGGAGGAGGAACAACGACTGTCAAATGGCTTAAGAAGCATCAACCAAAGAGACGAAAA GGAATCTCATAGTGATAAAATATTTAAACAAAAAATGAAGGACTTAGGAGAGACACAGAGGAAGATAGATGAAGCGAACTCAATCTTGAAGAGGAAAGAA GATGATATTAGTACTCGACGAACAAACTTTAATCTGATGGAAAAGGACTTTGTTGCTACGAAAGAGAATCTACAGTTGAAGGAGAAGGAGTTACAAATAG TTGAAGAGAAGTTGAATGAGAGGGAAAAAGCTGAGATTCCAAAACTCCTTAGCGAGCACAATACTATTTTGGATGCAAAACGATGCGAGTTTGAGTTGGA AGCTGAGGAAAGGAGCAAGGTTGTCGAAGAGGAGTTAAAAAGCAAAGTGATTTATCTGGAGAAGAAGGAATTTGACATCAAGCATATGGAGGAGAAAGTT ACAAAAAGAGAGCAGGTTTTGGATAAGAAACTGGAGAAACTTAAGGATAAAGAAAATGATTTTGAATCCAAATCAGGTCTTATGGAAAGGGAGAAGGCCA CCAAATTGGAAGACCAAGCCTTGGAGGGAGAGAGAAGATGCGTGCAGAACGATAAAGAACAACTTCTGGACCTCAAAGCCGAACTTGAGAATATAAAAGC TTCTAATGAGCTGCAGCTCCAAAAGCTATGCGCAGAGAAAGAGCAACTCCAAATAAGTGAACAGGAGAGGTCTGATTATGTCCGCTTGCAATCTGAGCTA AAAGTCGAACTAGAACGGTGCAGATTTAGGGAGGAGCTGCTCTTGAAGGATGCTGCTGATTTGAAGCTGCAAAAGGAGAACTTTGAACGGGAGTGGGAAG AGTTGGATGAGAAAAGAACTGAAATTGAAAGAGAGAAGAAAAGTCTTAGTGATGAGAAGGAAAAGTTTGAGAAGCAAAAGCAATTGGTAGAAGAAAGGAT AAAGCGTGATAGAACAGCGATGAATGACTATATAAAAAGGGAACTCAAGTCTCTTGAGTTAGCAAAGGAATCTTTCAAGGCACACTTGGAGCATGAGCAC AAGATTATGGCAGAGAAGGCACAAAGTGACAGGGACTTATTACTACATGACATTGAGCTACAGAAGTCTGAACTTGAGAGTAGCTTGCAGAAACTTCGGG AAGAAATGGACAGAAACCTGCAGGAAAAGATGAGACTCTTTGACTATGAGAAGCAGGGAGAATCGAAGAATGTTAATCTCTTGAGAGATGTAGCTAGAAG AGAGAAGGAAAATATAATCGCAGAAAGATCCAGGATAGAAAAAGACAGAAAACGACTTGATGAAAACAGGAAGCATCTCCAAGCGCAACAACTTGAAATG CATGAAGATATCAGCAAGCTTGGTGATCTTAGTAGGAAACTTAAGAAGCACAGGGAACAATTTATGAAAGAGAAAGATTCTTTTGTTGAGCAACGCAAGG GTTGCAGTAACTGTGAGGATATAACTTTCCAATATATGCTTTCGGGAAAAGATAACACACATGTTTCTGCTTCCAGACAGGGATTAGAGAGCGAGAAGTC TCCTTCCGGCCACAGAGTATCCCCAGTATCTTGGCTACAAAAATATACTACACAAATATTCAAGCTCTCACCACATAAGAGGGTAGAAGATTTGAAGGAG GGTGCTCTGGACACGGACAAGGAAGAACTTTCCAACAAAGTTGATGTCCATGCGGATGAAAAAGAGCTATCTTTAGCTTATAGAAACCATTTGCGTGATG ACCAAATGGTTCTTCCATGTTCCGGTGTGGCTGCAGCTGAAGATAATCTGTCATTGAATGACCTAAGCAATATCAACTGTGGCTCATTGGACTTGGAAGA AGTCTCCCAACCTTCTGATTTGAAGCATGGTATGGGTCGCTATAAACGAAGAGGAAAAGTGAGTAGAACACACTCTGTGAAGTCAGTTATTGCTGATGCC AAGGTGATTCTTGCGGAGCCATTAGAGGCTATTGTGGCTGATGAGTCGAGCCATTTGATATCTGAAAGCCATGAGGAATCTAGTCTTGCTGATGACCGTA CTCAAAGAATTGCTGGAAGGAAGAGAAATCGAAGACTAGCCTCTCAGACAACTGCAAGCGAACGTGGTGGCAATGAGAGCGAAGGACACTCTGATAGCGT AACCGTTAGTAAGCGCAAGAAAAGTCGAGCGGGAACTACCATGCAAGCTCCAGCTGAAACACGATATTATCTCCGGCGATCAAAACGAGATGCCGTTGGG AATGCTGCAGCTGCGTCGGACTTGAAGAACGAAAATGAAGAAGAAGCCAATGGTGTGGTGCGTCCAGAGGATGGAAATATCTCAGGAGTAGATGCTACTG AGCGAGGCAAGAATGGAAAATCTGCGCAGATTGAGGTAGTTGCAGAAGACATGGATGGTGAACCTATGGCAGGGACAAACCAGGAAATGAGTGAAGTGGT GAGTGGGAGACTGGTTATAGGTGGGGAGAATGGGACTCCCAGCGAATCCAGCCGTGAAGATATGGATGATGAAGAAGAAGAAGAAGAGTATGAACATCCC GGTGAAGCCTCAGTAGGAAAGAAGCTGTGGACGTTTTTCACAACGTAG
AA sequence Show only first row Show all	>Lus10034076 pacid=23154875 polypeptide=Lus10034076 locus=Lus10034076.g ID=Lus10034076.BGIv1.0 annot-version=v1.0 MSTPQRASWSEAKKSGRAFRRTPNSSKIGGDGSRLRGKAVDFAEAMTPHGVTYALDDEDLPTKVSRLENELYEYQYNMGILIMEKKGWSAEFEELKQVLT DTTDGIKREQAAHLMAISDAERQEGKLRDTLDVEKHCAVDLQKAVQEMHAEIAEMQSRADSKLTDANAMVSSVEEKYLDVEAQQRAIEARLAELSRKSSE LARKSQDVDSLESSLRLERLSVAAGKEAHATTFSKQREEFREWERKLEEEEQRLSNGLRSINQRDEKESHSDKIFKQKMKDLGETQRKIDEANSILKRKE DDISTRRTNFNLMEKDFVATKENLQLKEKELQIVEEKLNEREKAEIPKLLSEHNTILDAKRCEFELEAEERSKVVEEELKSKVIYLEKKEFDIKHMEEKV TKREQVLDKKLEKLKDKENDFESKSGLMEREKATKLEDQALEGERRCVQNDKEQLLDLKAELENIKASNELQLQKLCAEKEQLQISEQERSDYVRLQSEL KVELERCRFREELLLKDAADLKLQKENFEREWEELDEKRTEIEREKKSLSDEKEKFEKQKQLVEERIKRDRTAMNDYIKRELKSLELAKESFKAHLEHEH KIMAEKAQSDRDLLLHDIELQKSELESSLQKLREEMDRNLQEKMRLFDYEKQGESKNVNLLRDVARREKENIIAERSRIEKDRKRLDENRKHLQAQQLEM HEDISKLGDLSRKLKKHREQFMKEKDSFVEQRKGCSNCEDITFQYMLSGKDNTHVSASRQGLESEKSPSGHRVSPVSWLQKYTTQIFKLSPHKRVEDLKE GALDTDKEELSNKVDVHADEKELSLAYRNHLRDDQMVLPCSGVAAAEDNLSLNDLSNINCGSLDLEEVSQPSDLKHGMGRYKRRGKVSRTHSVKSVIADA KVILAEPLEAIVADESSHLISESHEESSLADDRTQRIAGRKRNRRLASQTTASERGGNESEGHSDSVTVSKRKKSRAGTTMQAPAETRYYLRRSKRDAVG NAAAASDLKNENEEEANGVVRPEDGNISGVDATERGKNGKSAQIEVVAEDMDGEPMAGTNQEMSEVVSGRLVIGGENGTPSESSREDMDDEEEEEEYEHP GEASVGKKLWTFFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	0	1
AT3G48710			DEK domain-containing chromati...		Lus10035905 [exp]	1.0	0.8938
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	4.7	0.8283
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	4.9	0.8532
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10000468 [exp]	6.3	0.8494
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	8.5	0.8667
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	10.1	0.8332
AT1G75150			unknown protein		Lus10010814 [exp]	13.0	0.8717
					Lus10030985 [exp]	13.5	0.7676
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	14.0	0.8363
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	17.4	0.8455

Compare expression of checked genes

Lus10034076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.