Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21060 532 / 0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT4G19710 165 / 6e-45 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 164 / 2e-44 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003073 [exp] 681 / 0 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10041071 [exp] 162 / 1e-43 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10030339 [exp] 152 / 3e-40 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196200 [exp] 591 / 0 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.019G071700 [exp] 172 / 3e-47 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.013G099500 [exp] 171 / 8e-47 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03447 [flax] [poplar] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF00742 [flax] [poplar] Homoserine_dh Homoserine dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034077 pacid=23154814 polypeptide=Lus10034077 locus=Lus10034077.g ID=Lus10034077.BGIv1.0 annot-version=v1.0 ATGAAGACGATTTCTCTGCTTCTGATGGGATGTGGAGGAGTTGGTCGCCACCTCCTTCACCACATTCTCTCCTGTCGATCTCTTCATGCCAAGCAGGGAA TCCACTTGAGAGTTGTGGGCGTCTCTGACAGCAAATCGTTAGTTGTTGCATCCAATGTGTTAACGGGAGAACTCAAAGATAACTTCTTGTCTGAAGTTTG CCGGGTCAAGTCAGATGGTTCTTCCCTCTCAAAGCTTGTGCAACTTGGTGACTGCCATCTGCTCATGGATTTTGAATCCAGAAGTAAAGTGATGGAGATC GCAGCTCTTCTAGGAAAATCGACAGGCTTGGTGTTTGTAGACTGCTCTGCCAGTTCAGAGACTGTTGAAATACTGACTCAAGTAGTTGATCTAGGATGTT TCATTGTCTTGGCAAACAAGAAACCTCTTACCTCATCAATGGAACACTATGAAAAACTTGCTCTGTATCCCCGTCGTATTCGCCATGAATCCACAGTTGG TGCAGGCCTTCCTGTAATAGCATCCTTGAACCGCTTACTTTCATCTGGAGACCCTATCCATCGCATAGTTGGAAGTTTGAGTGGCACACTGGGATATTTG ATGAGCGAGGTTGAAGATGGAAAGCCACTAAGTGAAGTTGTTAAAGCAGCTAAAACTCTGGGCTTCACAGAGCCAGATCCACGTGATGACCTTAGCGGGA TGGACGTCGCTAGGAAGGCTTTGATCCTTGCTCGACTACTTGGGAAACGGATTACCATGGATAGCATTAAAATTGAAAGCTTGTATCCTGATGAGATGGG ACCTGAAGTGATGTCTGTCGAAGAATTCTTGAGCAAAGGCATCGTGTTACTTGATAGTGATGTTCAAGAAAGAGTTAGAAAGGCATCCATGCATGGCAAC GTGCTCCGTTATGTTTGTGTCATTGAGGATTCAAGGTGTGAGGTTGGCATTCAAGAGCTTCCGAAGAACTCTCCCTTGGGAAGATTGAGAGGAAGCGACA ATGTGTGGGATATATATAGCGGTTGTTACAGTAACCAGCCACTTGTTATCCAAGGTGCTGGGGCAGGCAACGATACCACTGCGGCCGGTGTTCTTGCCGA TATTCTGGACATCCAAGATCTGTTTCCTTGA
AA sequence Show only first row Show all	>Lus10034077 pacid=23154814 polypeptide=Lus10034077 locus=Lus10034077.g ID=Lus10034077.BGIv1.0 annot-version=v1.0 MKTISLLLMGCGGVGRHLLHHILSCRSLHAKQGIHLRVVGVSDSKSLVVASNVLTGELKDNFLSEVCRVKSDGSSLSKLVQLGDCHLLMDFESRSKVMEI AALLGKSTGLVFVDCSASSETVEILTQVVDLGCFIVLANKKPLTSSMEHYEKLALYPRRIRHESTVGAGLPVIASLNRLLSSGDPIHRIVGSLSGTLGYL MSEVEDGKPLSEVVKAAKTLGFTEPDPRDDLSGMDVARKALILARLLGKRITMDSIKIESLYPDEMGPEVMSVEEFLSKGIVLLDSDVQERVRKASMHGN VLRYVCVIEDSRCEVGIQELPKNSPLGRLRGSDNVWDIYSGCYSNQPLVIQGAGAGNDTTAAGVLADILDIQDLFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10034077 [exp]	0	1
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	4.7	0.7442
AT5G56670			Ribosomal protein S30 family p...		Lus10028808 [exp]	5.0	0.7975
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10021994 [exp]	11.4	0.7833
AT1G64355			unknown protein		Lus10023098 [exp]	12.0	0.7672
AT4G13590			Uncharacterized protein family...		Lus10011763 [exp]	13.2	0.7699
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	17.7	0.7478
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	25.3	0.7639
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	28.7	0.7058
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	29.2	0.7279
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	30.0	0.7466

Compare expression of checked genes

Lus10034077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.