Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47090 73 / 2e-15 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 70 / 3e-14 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 67 / 2e-13 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 63 / 5e-12 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 60 / 6e-11 EFR EF-TU receptor (.1) AT2G24130 60 / 9e-11 Leucine-rich receptor-like protein kinase family protein (.1) AT5G39390 57 / 1e-09 Leucine-rich repeat protein kinase family protein (.1) AT4G28650 53 / 2e-08 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G16590 46 / 3e-06 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 46 / 4e-06 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003071 [exp] 140 / 2e-43 AT3G47090 49 / 7e-08 Leucine-rich repeat protein kinase family protein (.1) Lus10035429 [exp] 138 / 4e-38 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 136 / 2e-37 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 134 / 1e-36 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 122 / 1e-32 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 107 / 2e-27 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 100 / 2e-24 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 93 / 3e-22 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 89 / 9e-21 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 89 / 5e-21 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 89 / 8e-21 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 89 / 1e-20 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 88 / 1e-20 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 88 / 2e-20 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 87 / 2e-20 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 87 / 3e-20 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 87 / 4e-20 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 87 / 5e-20 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 86 / 1e-19 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034078 pacid=23154797 polypeptide=Lus10034078 locus=Lus10034078.g ID=Lus10034078.BGIv1.0 annot-version=v1.0 ATGCTAGGACCCCATTTGGAGCCCTTGCCTCCGCCTCTTCATTTATCAAATCACTTGTGTGTTCGATTTCTGGGAAATGTAGAGTACGGGATGGGAGTGC CGGTATCGAAAGAAAGAGATGTGCATAGCTACTGGATCCTTGTGCTAGAGATGTTCACTGGGAAAAGACCCACAAACGAAATCTTCGAAGACGGTGCGAA TCTCCGAGAATTTGTGAAAGCAGAAATTCCTGACGGAATAACATCAGTACTAGACCCATCAGTGTGTCTTTCTTTAACTACTAGCATCAACATTGCGGAA TCTGGCCGTATGTCTGAAAGTGCCAGAGAGTGTTCGGCATCAGTACTTGAAATTGGTGTTAGTCGCTCCACTGAAACGGCCGGAGAACGTATGAAGACGG CTGATGTTGCTAGAATGATTGGCTTCTATTTCGGGACGTTTTCGTTGCAGCAGCCACCGCGAGGAGGCACAGGCGACAACGAGGCTCTAAACTCTCGTTG GTTAAGCTTCATCAACTAG
AA sequence Show only first row Show all	>Lus10034078 pacid=23154797 polypeptide=Lus10034078 locus=Lus10034078.g ID=Lus10034078.BGIv1.0 annot-version=v1.0 MLGPHLEPLPPPLHLSNHLCVRFLGNVEYGMGVPVSKERDVHSYWILVLEMFTGKRPTNEIFEDGANLREFVKAEIPDGITSVLDPSVCLSLTTSINIAE SGRMSESARECSASVLEIGVSRSTETAGERMKTADVARMIGFYFGTFSLQQPPRGGTGDNEALNSRWLSFIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47090			Leucine-rich repeat protein ki...		Lus10034078 [exp]	0	1
AT5G48140			Pectin lyase-like superfamily ...		Lus10013784 [exp]	2.6	0.8524
AT1G13570			F-box/RNI-like superfamily pro...		Lus10003016 [exp]	6.6	0.8015
					Lus10015828 [exp]	19.9	0.8264
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	23.7	0.8254
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	28.6	0.8252
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10035918 [exp]	29.5	0.8139
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	29.9	0.8249
AT3G61660			unknown protein		Lus10005152 [exp]	31.0	0.7057
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040148 [exp]	31.3	0.6757
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	34.6	0.8243

Compare expression of checked genes

Lus10034078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.