Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 206 / 9e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 197 / 1e-60 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT1G13420 193 / 1e-59 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G43690 192 / 3e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74100 191 / 9e-59 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45080 190 / 2e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 188 / 2e-57 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT2G14920 187 / 3e-57 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT1G18590 186 / 2e-56 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT2G03760 181 / 6e-55 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003070 [exp] 479 / 1e-171 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 358 / 4e-124 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 357 / 1e-123 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10033716 [exp] 347 / 1e-119 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 346 / 3e-119 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033721 [exp] 348 / 7e-116 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 337 / 2e-115 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 328 / 3e-112 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033719 [exp] 327 / 1e-111 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 219 / 1e-69 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 219 / 1e-69 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.012G032700 [exp] 216 / 1e-68 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.017G100500 [exp] 212 / 5e-67 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.017G100400 [exp] 207 / 9e-65 AT3G45070 250 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G193500 [exp] 206 / 2e-64 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 205 / 3e-64 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 202 / 3e-63 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048200 [exp] 201 / 1e-62 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.010G138450 [exp] 198 / 2e-61 AT3G45070 350 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10034079 pacid=23154716 polypeptide=Lus10034079 locus=Lus10034079.g ID=Lus10034079.BGIv1.0 annot-version=v1.0 ATGAGTTCAACAGAGCAGCTTCTTGATCATGGCAACAAAGTTGCAGAAGTGTTTTGGGATGTTATGGAGATGACCCAGATAGAAGGGTTCTGGTATTCCT CCACAAGGGTGGGATGCATAGATGCCTTCAGAGCGAACTTCGAGCCCAGTCGAGACGACGTTGTAGTCTTGGCATCGGCTAGGAAAACAGGAACAACTTG GCTCAAGGCTCTCTGTTATTCCATCCTCTATCGAGACAAAGAAGAAGATGATCTTCTTGTGAAGATGAATCCTCATAGCTTTGTTCCAACCTTTGAGACT ACTCTCTATATCGACAACCCATCAATCCCTCGCCTTGATCCTGGGAAACGAATTAACGGCTGCAAATTGGTATACATCACAAGAGGGCCAAAAGACACCT TGGTATCGCAGTGGCATTTCTACAACAAAATACTCGGACGGCAGTCTCCCTTCCCACTGGAGAGAGCCGTGGAGAGCTTCTGCAGCGGCGTGATGCCATT CGGGCCGTACTGGGAGCACGTGTTGGGGTACTGGGAAGAAAGCAAGAAATCTCCCGACAAGGTGATGTTTATCAAGTACGAGGATCTTCAGCGCGAACAG AAAGTACTGCACGTTCGCAAGCTGGGATCGTTTCTCGGAAGGCCTTTTGGTGATGATGAAGAAGGAGAAGTTGAGAAGGTTATATGGAGGAGCAGCTTTG ACCGCCTTAAGGATTTGGAAGTCAACAAGACAGGGAAGCCACCGCAGGCGAGCTGGGTTCCTCTTCTGAGGAACAGTCACCTCTTCCGTCGAGGGGAAGT TGGAGACTGGCGGAACTACTTGAGTTCAGAGATGGCGAAACGTATTGATGACATCACGAAGGAGAAGTTTCATGGTGTTGGGCTTCGAATGGACGAGGAG GATGCTCTTTAG
AA sequence Show only first row Show all	>Lus10034079 pacid=23154716 polypeptide=Lus10034079 locus=Lus10034079.g ID=Lus10034079.BGIv1.0 annot-version=v1.0 MSSTEQLLDHGNKVAEVFWDVMEMTQIEGFWYSSTRVGCIDAFRANFEPSRDDVVVLASARKTGTTWLKALCYSILYRDKEEDDLLVKMNPHSFVPTFET TLYIDNPSIPRLDPGKRINGCKLVYITRGPKDTLVSQWHFYNKILGRQSPFPLERAVESFCSGVMPFGPYWEHVLGYWEESKKSPDKVMFIKYEDLQREQ KVLHVRKLGSFLGRPFGDDEEGEVEKVIWRSSFDRLKDLEVNKTGKPPQASWVPLLRNSHLFRRGEVGDWRNYLSSEMAKRIDDITKEKFHGVGLRMDEE DAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10011051 [exp]	6.3	0.8870
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	6.7	0.8895
					Lus10027571 [exp]	10.4	0.7744
AT1G72100			late embryogenesis abundant do...		Lus10041310 [exp]	11.0	0.7700
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	11.2	0.8503
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	12.2	0.7620
AT3G21690			MATE efflux family protein (.1...		Lus10002067 [exp]	12.3	0.8483
					Lus10035524 [exp]	13.4	0.8310
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	14.1	0.8827
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039891 [exp]	14.4	0.8854

Compare expression of checked genes

Lus10034079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.