Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67210 266 / 2e-81 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2) AT5G38600 262 / 2e-78 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003067 [exp] 724 / 0 AT5G38600 342 / 5e-111 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G104400 [exp] 363 / 5e-115 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.017G111300 [exp] 353 / 1e-111 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04046 [flax] [poplar] PSP PSP
Representative CDS sequence Show only first row Show all	>Lus10034080 pacid=23154880 polypeptide=Lus10034080 locus=Lus10034080.g ID=Lus10034080.BGIv1.0 annot-version=v1.0 ATGGAAACCGAGGAGAACATTGGCACGCCTGCTGCCTGTGATTCTGAGAGAATAAAGCATGATAATAATCCGGATTTACAGCCAAGTACTGACGATTCTC AATCACATTCGGGAATTAAAGAAGATGTAGCAAATGTAGAACCTTCATGCCTCAATGGAAGTAACATTGGATTTGAAGCAGATGCTGATAATTCCACTCC TGGTGTAAGTGATCATGGAACTGAAGGTGGATCAGGCTACTTAGCATTCAGTAATGACAACATTGAAGATCAGGATGTCCAGGTTAACAAAACTGATAGT GACCAGGTTAATGGTGAAATAGAAGTTGACATGGATCTGGTCGATTCACCTATGCATGTGAATATTCAAGTGACTGAGGTATTTCCTGTTCAAGAGAACA TGCCTAGCATGTTGAATGCTGAAAATGGCAGCCTTGATGCACCCCCTGAGAGTTTTAAAGCTAGAGCAGGGGTTAAGAGAACAAGGACGACTTACGAACA ACAGCAACCTTCAGTGCGAGTCATGTACGATTCACTAGCGAGAGCTAGCAAACGGAAACTTGATGGGCTACTACAACAGTGGTCAGAATGGCATACAACT AACAGCATGTATCTAGATCCAGATGAAACGCTAGAATCTGGGGAAGAGACATATTTTCCTGCCATACACACTGGCATTGAGAAGTCATGCACAGTCTCTT TCTGCATAGACGACCGGACAAGAGACGAGCAGAACAACGGCATCATGCCACTTGACAGCAACAGTGTGCCCCTTTATGATCGGGGATTTCTTTTGGGTTT GACATCAGCAGATGGCCCACACAATGCAGAAAGAAGCCTGGAGATAATTGGCGAAGCTGCCCGTTGTTTTAACTGTGGTTCCTACAACCATGCTCTAAAA GATTGCAATAAGCCTCGTGACAACCTTGCTGTTAGTAATGCCCGCAAACAACATATGGCCAAACGGAATCAGAATCCCCATTCTCGCAGTTCCATTCGGT ACTATCAGAGCTCATCTGGTGGGAAGTATGATGGCTTGAAACCTGGCACTCTTCATGCCGAAACACGGACACTTTTGGGAATTGGGACGCCTGATCCTTT CTCCCTTTCCCTATTTGGCTTAATCGGGCAGGAGCTTGATCCACCACCCTGGCTAAACAGAATGCGGGAGCTGGGATACCCTCCTGGATATCTAGATGCC GATAGTGAAGATCAACCATCTGGAATAACAATATTTGGCGAAGAAGAAGTCGCCATTGACTCAGTAAAGAAAAAAGAAGTCATCATTGAAGAACAGGAAG AAGGGGAAATAAACGAAATAAATGTCGTCCAACCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAA TAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTC GAGCCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATG AAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGA AGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAAT AAGACAGTACAAGAAGGGGAGATGAATGAAATAAATGCCGTCGAGCCCAGCAAGAATAAGACAGTACAAGAAGTGGAGATGAATGAAATAAATGCCGTGG AGCCCGTCAAGAAGAAAACAGTAGAGTTCCCCGGAATAAACGCCCCAATCCCGGAGAATGCAGATGAATTTCTCTGGGCGCAGGCTTCCTCTAGTTTTTC TGATAGTTACAGGAACCGGTCACAACGCGAGCACACTAGCAGGTTTTACCACAGCGAACAAAGACGGTCTAGAAGTTTCATGGACGACGGACCACCAGGC GTTGACCCGATAATAAGCCCTTCCATATCCAGTTATCCTCCGAGATACGGAAGCCATGGTGGTTATGACAGCCCTAGAGACCTTGCCCCTGCCTTTGCAA GAGATAGGGAATGGAGGAGCCCTCCTCGATATGATGATTATGGCAGTCGGTCCTCGTACCGTTCGCCACGTGAGTATAGCAGTTCGAGATACGAATACGA CATGGATGATAGATGGGATGGGCGTGGTGGTGCGGATCATTCGTCGAGCTACGATTATGAATTTGAAGGGCATCATCACTCTAGAAGGCGGATGTCCTAG
AA sequence Show only first row Show all	>Lus10034080 pacid=23154880 polypeptide=Lus10034080 locus=Lus10034080.g ID=Lus10034080.BGIv1.0 annot-version=v1.0 METEENIGTPAACDSERIKHDNNPDLQPSTDDSQSHSGIKEDVANVEPSCLNGSNIGFEADADNSTPGVSDHGTEGGSGYLAFSNDNIEDQDVQVNKTDS DQVNGEIEVDMDLVDSPMHVNIQVTEVFPVQENMPSMLNAENGSLDAPPESFKARAGVKRTRTTYEQQQPSVRVMYDSLARASKRKLDGLLQQWSEWHTT NSMYLDPDETLESGEETYFPAIHTGIEKSCTVSFCIDDRTRDEQNNGIMPLDSNSVPLYDRGFLLGLTSADGPHNAERSLEIIGEAARCFNCGSYNHALK DCNKPRDNLAVSNARKQHMAKRNQNPHSRSSIRYYQSSSGGKYDGLKPGTLHAETRTLLGIGTPDPFSLSLFGLIGQELDPPPWLNRMRELGYPPGYLDA DSEDQPSGITIFGEEEVAIDSVKKKEVIIEEQEEGEINEINVVQPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAV EPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAVEPSKNKTVQEGEMNEINAVEPSKN KTVQEGEMNEINAVEPSKNKTVQEVEMNEINAVEPVKKKTVEFPGINAPIPENADEFLWAQASSSFSDSYRNRSQREHTSRFYHSEQRRSRSFMDDGPPG VDPIISPSISSYPPRYGSHGGYDSPRDLAPAFARDREWRSPPRYDDYGSRSSYRSPREYSSSRYEYDMDDRWDGRGGADHSSSYDYEFEGHHHSRRRMS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	0	1
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	1.4	0.8918
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10016328 [exp]	2.4	0.8724
AT3G61610			Galactose mutarotase-like supe...		Lus10000254 [exp]	6.6	0.8003
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	6.8	0.8867
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	8.1	0.8629
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	10.4	0.8406
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10023013 [exp]	12.3	0.8713
					Lus10016109 [exp]	16.7	0.8392
AT2G38780			unknown protein		Lus10019776 [exp]	23.2	0.8274
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	23.7	0.8577

Compare expression of checked genes

Lus10034080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.