Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38560 590 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 498 / 3e-166 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 489 / 7e-164 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 445 / 1e-146 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 441 / 5e-145 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G23540 431 / 3e-141 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24550 420 / 1e-137 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 408 / 7e-133 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G70450 398 / 7e-133 Protein kinase superfamily protein (.1) AT1G52290 400 / 1e-131 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003066 [exp] 797 / 0 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10017898 [exp] 482 / 1e-160 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10035071 [exp] 454 / 8e-151 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 429 / 2e-141 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013014 [exp] 421 / 5e-141 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029151 [exp] 419 / 2e-140 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10023645 [exp] 422 / 9e-138 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 418 / 6e-137 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 422 / 1e-136 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110400 [exp] 652 / 0 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 649 / 0 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 513 / 9e-173 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 512 / 6e-172 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.008G189700 [exp] 454 / 8e-150 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 424 / 3e-139 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 416 / 6e-137 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.007G027000 [exp] 403 / 3e-131 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 399 / 2e-130 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.009G115200 [exp] 388 / 2e-125 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034082 pacid=23154816 polypeptide=Lus10034082 locus=Lus10034082.g ID=Lus10034082.BGIv1.0 annot-version=v1.0 ATGGATTCATCAGCACCCGCGCCAGACTCATCAACTACATTGGCAACACCACCATCTTCCTCCACCATTATCCCATCATTGCCATCTCTTCTATCTCCTC CTTCAACCACTGCTTCTCCATCTCCAAGTACAAGCCAGCCTGATCAGACCACTGATCCTCCTGCCACTCCTGCAAATCCTACTTCCCCCCCACCTCAATC TCCACCACCAACAACCCCAGCTGCTGCTCCTCCTCCATCCCCTCCCTTATCATCACCTCCATCAGCAGCATCCCCACCTCCAACGTCTCCACCAATTCTA ACCTCACCACCACCATCAGCTTCCATTGCCACCCCTCCTCCAGCTGCAATTGCTACTCCACCTCCAGTTCCAGATGTTTCACCTCCACCTCCAGCCCCTA TTATCAGCTCTCCTCCTCCAGAGCCCTCCCCTACAACACCTGTTCTATCCCCTCCCCCACCTCAAACTGTAACCCCTTCACCACCACCTCCTTCCAATGA CTCACAGTCACCGCCACCTCCTTCCAACGACTCACCGTCACCACCACCTCCTTCAAATGACTCACCATCCCAGCCACCCCCATCACAAGAAAACCCTCCT CGAGATTCTTCCCCACCTCCTGCTTCTCCTCCCCCACCTATATCCACATTGCCTTCTCCACCTCCTGGTGTCCCTTCCAATCCTATACTTTTTCCTCCGG GGCATTCTTCTTCGCGTAATGGGAGCTCGTCTGCAGCTTCGCCGTTGCCCTCTATTCCTACTGAGAAGCCAACAGCAAGGGAAACTGGTGGCACGACAAA TGTTTCTGCGAATTCTGGATCTCCTGGTTCTAGGGGTGGTTCCAATAATGGAACTGTGGCAGCTGGTGTTGTTGCTGGACTTGTGATAGCTGGTCTCCTT ATGATGGCTGCCTGGTTTCTACATAAACGGAAGAGGAGAAGGCGTAGTAATGAAGGCGTTGGATATTCTATGCCTTCTCCTTTTGCATCTTCTCAAAACT CAGATGTAGTGTTTATACAGCAGCCTCATTCTTCTGGTCCACTGAAAGGAAGCCTTTCTGGCAGTGATTTCATGTATTCCCCATCAGAGTCTGGTGGGAT GAACAATACAAGGTCTTGGTTCACCTATAACGAATTGAGCCAGGCTACAGACGGTTTCTCGAAACAGAATCTCTTGGGTGAAGGTGGATTTGGTTGTGTA TATAAAGGCATTCTAGTAGATGGAAGAGAAGTAGCTGTAAAACAATTGAAAATAGGTGGTTCTCAGGGGGAACGTGAGTTTAGAGCAGAGGTGGAGATTA TTAGCCGAGTACATCACCGCCATTTGGTTTCGTTGGTTGGTTACTGCATATCTGAGCATCAAAGACTGTTGGTTTATGACTTCCTTCCCAACGATACGCT GCATTATCATCTCCATACTGAAGGAAGGCCAGTCATGGATTGGGCATTACGAGTTAGAGTTGCAGCTGGCGCTGCTCGTGGGTTAGCCTACCTGCATGAA GACTGCCATCCCCGCATCATTCACAGAGATATAAAGTCATCAAACATCCTTCTGGACAACAATTTCGAAGCTATGGTTGCAGATTTTGGGTTGGCGAAAC TAGCTCTGGAACTGGATTCAAATACGCACGTAAGCACCCGGGTGATGGGAACTTTCGGGTACATGGCTCCAGAATACGCAACCAGTGGAAAGTTGACAGA GAAGTCTGATGTCTATTCGTTCGGGGTCGTGCTTCTGGAACTAATTACAGGCCGTAAACCTGTGGATCCTTCTCAGCCCCTCGGCGACGAGAGCCTGGTC GAGTGGGCTCGGCCATTGCTGACTGAAGCACTTGACAACGAGGACTTCGGACTGCTGAGTGACCCAAGACTGGAAAAGAAGTATGTAGCTGCCGAAATGT TCAGAATGATGGAGGCTGCTGCAGCGTGTGTGCGGCATTCGGCTGTAAAGAGACCTCGAATGAGTCAGGTTGCAAGAGCTTTGGATTCGGTAAACGAGTT GTCAGACTTATCGAACGGTATGAAACCGGGACAAAGTGAAATCTACGATTCTAGACAGCAGTCGGCGCAGATAAGGATGTTTCAGAGGATGGCATTTGGT AGTCAGGACTATAACAGTTCAGAGTATTTCAACCACAGTCAGAGTAGCTGGAGCAGTACTCGAGAGTACAGGGAGAGGGAGAGGAGCAATTCGTTCATAC CGTGA
AA sequence Show only first row Show all	>Lus10034082 pacid=23154816 polypeptide=Lus10034082 locus=Lus10034082.g ID=Lus10034082.BGIv1.0 annot-version=v1.0 MDSSAPAPDSSTTLATPPSSSTIIPSLPSLLSPPSTTASPSPSTSQPDQTTDPPATPANPTSPPPQSPPPTTPAAAPPPSPPLSSPPSAASPPPTSPPIL TSPPPSASIATPPPAAIATPPPVPDVSPPPPAPIISSPPPEPSPTTPVLSPPPPQTVTPSPPPPSNDSQSPPPPSNDSPSPPPPSNDSPSQPPPSQENPP RDSSPPPASPPPPISTLPSPPPGVPSNPILFPPGHSSSRNGSSSAASPLPSIPTEKPTARETGGTTNVSANSGSPGSRGGSNNGTVAAGVVAGLVIAGLL MMAAWFLHKRKRRRRSNEGVGYSMPSPFASSQNSDVVFIQQPHSSGPLKGSLSGSDFMYSPSESGGMNNTRSWFTYNELSQATDGFSKQNLLGEGGFGCV YKGILVDGREVAVKQLKIGGSQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDFLPNDTLHYHLHTEGRPVMDWALRVRVAAGAARGLAYLHE DCHPRIIHRDIKSSNILLDNNFEAMVADFGLAKLALELDSNTHVSTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDPSQPLGDESLV EWARPLLTEALDNEDFGLLSDPRLEKKYVAAEMFRMMEAAAACVRHSAVKRPRMSQVARALDSVNELSDLSNGMKPGQSEIYDSRQQSAQIRMFQRMAFG SQDYNSSEYFNHSQSSWSSTREYRERERSNSFIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10034082 [exp]	0	1
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	6.9	0.8934
AT5G10160			Thioesterase superfamily prote...		Lus10015830 [exp]	13.0	0.8946
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	15.7	0.8825
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	17.3	0.8901
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	21.7	0.8869
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	22.4	0.8105
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10038973 [exp]	23.2	0.8777
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	23.3	0.8713
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	23.5	0.8870
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	23.9	0.8789

Compare expression of checked genes

Lus10034082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.