Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 523 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 520 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 467 / 7e-163 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003065 [exp] 772 / 0 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10034399 [exp] 499 / 2e-175 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 497 / 5e-174 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 487 / 8e-170 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 485 / 3e-169 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10033548 [exp] 47 / 2e-05 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10017587 [exp] 46 / 3e-05 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110700 [exp] 561 / 0 AT5G15860 541 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.004G104800 [exp] 554 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.010G132200 [exp] 471 / 2e-164 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 46 / 3e-05 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 42 / 0.0004 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10034083 pacid=23154893 polypeptide=Lus10034083 locus=Lus10034083.g ID=Lus10034083.BGIv1.0 annot-version=v1.0 ATGGCAGCGACGGCGGCCATGTCTTCACCTCCACCACAACCAATCCTTCACTCGTCGGATCGCCACCGCGCATTCTCTCCCCCCTCTGCTGAACTGAGCA AGGATGGATCAGATACGGAGAGACTGCTTTCCAAGGATGGCGATACCGTCCGCGCCGGCGGATTCAAACAACATCAGCAGCCTCGTCGACGTATGGTGGC GAAGCATGGGCGGCCTCTGAGGCAGAAGTCGTTTACTCGAGATTTCGGTCACGCCGCCTGCGAGACTTACCTCATCACTCGACTGGCAATCCAGCTTCTG CAATACCTCGGGGTAGGTTATCGATGGATCACGAGATTAGCTGCTCTTGGGCTCTATGCGATGCTTCTCATGCCTGGATTCCTTCAAGTTGCATATTACT ACTACTTTTCTAGCCACGTGAGACGTAGCATCACATATGGTGACCAGCCCAGAAACCGGTTGGATCTACATTTACCCAAATGTACTGACGAACCAAAGCC AGTTGTCATATTCGTAACAGGCGGTGCCTGGATTATTGGGTACAAAGCATGGGGTGCTCTTCTTGGGAAACAGTTAGCTGAGAGAGGCATCATTGTCGCA TGTGTCGATTACAGAAATTTTCCCCAGGGAACAATCAGTGATATGGTTACAGATGCTTCTCGGGCAATCTCATTTATCTGCAGCAACATCTCTGAATATG GAGGGGACCCTAACAGGATTTATCTGATGGGACAATCAGCAGGTGCACATATTTCGTCATGTGCTCTCTTGGACCAGGCATTCAAGGAGGCAAAGGGAGA AGAGGACCTATGTTGGAGCGTCTCGCAAATAAAAGCCTATTATGGTTTGTCTGGACCGTACAACTTACTAAATTTGGTTGACCATTTCCACAACCGGGGT CTCTATCGCTCCCTTTTTTTGAGCATCATGGATGGCGAGGAGTCGTTGCATAAGTTTTCTCCTGAAGCAAGACTTAAAGATCCAAGAGCCAAAGATGCTG TTTCTCGTTTGCCGCCTATTGTTCTTTTCCATGGAACTGCAGATAAATCTATCCCATCATGTGCGAGTGAAGCCTTTGTAGACGCTCTTCGAAGCTTAGG AGCCGACGCGGAGCTTGTTCTTTTCAAAGGAAAAACTCATACGGACTTGTTTCTCCAGGATCCATTGAGAGGCGGTAGAGATGAGCTGTTTGATCGAATA GTGGCTTGTATACATGCCGGGGATGCGGAAGCTCTTGCCGAAGATGCCAAGGCACCTGGGAGAAGACGCCTGGTTCCAGAACTTCTGTTAAGGTTGGCTG GTCACATCAGCCCATTTTAG
AA sequence Show only first row Show all	>Lus10034083 pacid=23154893 polypeptide=Lus10034083 locus=Lus10034083.g ID=Lus10034083.BGIv1.0 annot-version=v1.0 MAATAAMSSPPPQPILHSSDRHRAFSPPSAELSKDGSDTERLLSKDGDTVRAGGFKQHQQPRRRMVAKHGRPLRQKSFTRDFGHAACETYLITRLAIQLL QYLGVGYRWITRLAALGLYAMLLMPGFLQVAYYYYFSSHVRRSITYGDQPRNRLDLHLPKCTDEPKPVVIFVTGGAWIIGYKAWGALLGKQLAERGIIVA CVDYRNFPQGTISDMVTDASRAISFICSNISEYGGDPNRIYLMGQSAGAHISSCALLDQAFKEAKGEEDLCWSVSQIKAYYGLSGPYNLLNLVDHFHNRG LYRSLFLSIMDGEESLHKFSPEARLKDPRAKDAVSRLPPIVLFHGTADKSIPSCASEAFVDALRSLGADAELVLFKGKTHTDLFLQDPLRGGRDELFDRI VACIHAGDAEALAEDAKAPGRRRLVPELLLRLAGHISPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10034083 [exp]	0	1
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025513 [exp]	3.2	0.7476
AT2G43250			unknown protein		Lus10040469 [exp]	8.0	0.7620
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	14.2	0.7639
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	20.8	0.7479
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	21.2	0.7195
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	21.2	0.7242
AT4G08330			unknown protein		Lus10018170 [exp]	23.0	0.6697
AT1G22750			unknown protein		Lus10028718 [exp]	29.2	0.7601
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	30.7	0.6919
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	34.6	0.7087

Compare expression of checked genes

Lus10034083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.