Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02420 428 / 3e-150 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003064 [exp] 422 / 6e-147 AT3G02420 372 / 2e-127 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110600 [exp] 471 / 3e-167 AT3G02420 532 / 0.0 unknown protein Potri.004G104900 [exp] 461 / 2e-163 AT3G02420 513 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034084 pacid=23154838 polypeptide=Lus10034084 locus=Lus10034084.g ID=Lus10034084.BGIv1.0 annot-version=v1.0 ATGGGGGGAGAGGGCGAAGATCCGCAGAAGTTGAAGAAAGTAGCGGCGGCGACTTATGATTACGAGAACGACCCACGATGGGCGGATTACTGGTCCAACA TCCTCATCCCTCCCCACATGGCCTCTCGCGCCGATGTTGTCGCTCACTTCAAGCGCAAGTTCTACCAGCGCTACATAGATCCAGATCTTGTGGTCGAGGC AATGTCTACAACTGGCTCATCCCAGTCTGCAAAATCGCCTGCTTCATCTTCCTCCTCATCGCGATCCTCAAATGAACAACCTCGCCAGCGTAGCACAGCC ACAGGTCCAACAACCACAAACTCTGGAGGATCTGGAACTGCTGGGCAAGCTCCAACTTCAGGACGCTGGGATCGTCAAACTATACAATTCTCAATCAATG CTTGGCTAGAGATTGTATCCTCGCAGTTTTTTGTTGTGGCCGTGCTGGCAATCTTCCCTCTTGTACCTAAAAGTCTATCCAATAGAGCTTATCGACTGTC ATTCATGGGGACTGCTTGTTCATCTCTGTATTCGTTATACATGCTATACGGGAGGCCCAGAGCATTGAACTTGCAGGCGTTGCAGGTCTACTTGCAATCC ATAGTACCAACCAAAGATTTTATCTATGCTGTCTACTGTCTGACCTTTGTCACTTCAAACCTATGCCTCACATTTGCCTTGATTCCTATTCTCTGCCGGG CATTGCTGCATATTTCTAAATTCCTAAGGCGTAACTTCAACGGCTCTTCCTTGTACAGGAAGTATCTTGAAGACCCTTGTGTCTGGGTGGAGTCAAACAC CACCACCCTTAGCATTCTATCTTCACATTCAGAAATTGGGCTTGGGTTCCTTTTAATTATATCTTTGCTTTCGTGGCAACGAAACATAATCCAAACGTTC ATGTACTGGCAGTTAGTAGGAGTAGATGTGTGCTTGGTGGCCACCATACCTCTTTTAGCAAACGAGGCAATGAATGAGGAGAAAGTGCAATTGTTGAAGC TGATGTACCATGCACCAGTGACAGCTGGTTATCATCAAAGCGTGTGGTCTAAAGTCGGGAGGATCGTGAACCCGCTTGTCAGCCGTTACTGCCCATTCCT CGACACTCCAATTTCTGCTGTTAAAAGATGGTGGCTTAGGTAA
AA sequence Show only first row Show all	>Lus10034084 pacid=23154838 polypeptide=Lus10034084 locus=Lus10034084.g ID=Lus10034084.BGIv1.0 annot-version=v1.0 MGGEGEDPQKLKKVAAATYDYENDPRWADYWSNILIPPHMASRADVVAHFKRKFYQRYIDPDLVVEAMSTTGSSQSAKSPASSSSSSRSSNEQPRQRSTA TGPTTTNSGGSGTAGQAPTSGRWDRQTIQFSINAWLEIVSSQFFVVAVLAIFPLVPKSLSNRAYRLSFMGTACSSLYSLYMLYGRPRALNLQALQVYLQS IVPTKDFIYAVYCLTFVTSNLCLTFALIPILCRALLHISKFLRRNFNGSSLYRKYLEDPCVWVESNTTTLSILSSHSEIGLGFLLIISLLSWQRNIIQTF MYWQLVGVDVCLVATIPLLANEAMNEEKVQLLKLMYHAPVTAGYHQSVWSKVGRIVNPLVSRYCPFLDTPISAVKRWWLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02420			unknown protein		Lus10034084 [exp]	0	1
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	6.5	0.8733
AT3G47160			RING/U-box superfamily protein...		Lus10037053 [exp]	8.0	0.8995
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	10.2	0.8884
AT4G33540			metallo-beta-lactamase family ...		Lus10027583 [exp]	15.7	0.8622
AT3G47160			RING/U-box superfamily protein...		Lus10036934 [exp]	16.6	0.8935
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	20.0	0.8549
AT5G57580			Calmodulin-binding protein (.1...		Lus10001630 [exp]	20.8	0.8852
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	22.9	0.8884
					Lus10006006 [exp]	25.3	0.8868
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10023989 [exp]	31.5	0.8771

Compare expression of checked genes

Lus10034084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.