Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16260 508 / 7e-172 Wall-associated kinase family protein (.1.2) AT1G16130 505 / 2e-170 WAKL2 wall associated kinase-like 2 (.1) AT1G69730 504 / 3e-169 Wall-associated kinase family protein (.1) AT1G79670 500 / 4e-168 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G16160 493 / 4e-166 WAKL5 wall associated kinase-like 5 (.1) AT1G79680 494 / 1e-165 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G17910 493 / 2e-165 Wall-associated kinase family protein (.1) AT1G16150 493 / 7e-165 WAKL4 wall associated kinase-like 4 (.1) AT1G16120 484 / 5e-162 WAKL1 wall associated kinase-like 1 (.1) AT1G19390 476 / 3e-158 Wall-associated kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003063 [exp] 1213 / 0 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10038077 [exp] 429 / 1e-140 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10004504 [exp] 370 / 5e-119 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10013383 [exp] 372 / 2e-118 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013385 [exp] 371 / 2e-118 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10008105 [exp] 368 / 6e-118 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10013384 [exp] 345 / 2e-108 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013143 [exp] 246 / 2e-76 AT1G16160 270 / 2e-85 wall associated kinase-like 5 (.1) Lus10014387 [exp] 250 / 7e-74 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G148432 [exp] 639 / 0 AT1G16260 519 / 2e-175 Wall-associated kinase family protein (.1.2) Potri.018G148300 [exp] 631 / 0 AT1G79680 511 / 7e-172 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.018G148564 [exp] 620 / 0 AT1G79680 505 / 2e-169 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185688 [exp] 572 / 0 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040500 [exp] 571 / 0 AT1G16260 635 / 0.0 Wall-associated kinase family protein (.1.2) Potri.003G185700 [exp] 568 / 0 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039200 [exp] 562 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G039450 [exp] 562 / 0 AT1G79670 613 / 0.0 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) Potri.001G039900 [exp] 560 / 0 AT1G16130 597 / 0.0 wall associated kinase-like 2 (.1) Potri.001G038525 [exp] 558 / 0 AT1G16260 642 / 0.0 Wall-associated kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [flax] [poplar] EGF PF07645 [flax] [poplar] EGF_CA Calcium-binding EGF domain CL0001 [flax] [poplar] PF08488 [flax] [poplar] WAK Wall-associated kinase CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034085 pacid=23154655 polypeptide=Lus10034085 locus=Lus10034085.g ID=Lus10034085.BGIv1.0 annot-version=v1.0 ATGGCCAAACCTGGCTGCCAAAGTCAATGCGGCAACGTCCAAATACCATTCCCATTCGGCATTCGACCAGGCTGTTACCTTCACAAATGGTACGAGATCG TCTGTCACAAAAACCACAGTACCGTCCCCAACCATTTTGTTTCCAGACCATACCTTAACCATGTCCAGCTTAAGGTTGAGAACATCTCGGTCGAAACCGG GACCCTTCTTGTCAAGTTCCCAACTATTGCTAACTGTCATGACAGCATCAATCGGCAGGTTAACTTGGCAGGAAGCCCTTTTGTTCTGTCGTCGACTCGT AACAGGCTGACTGCAGTTGGTTGTGGCAGCCTTGCCATGATGTCGATGAAATCTACAGCTGTGGGAGGATGTATGTCCTTCTGTGACATGCTCACTCGTC CTGGTGATCTCAGAAACATGACCTGCAATGGTATCAGCTGCTGTCAGACCAATATCCCGTCCAATCTCCAGGTGTTCAATGCAACTTTATCCTATGTGAA GAATGGCACGATCCGGAGGAGAGGGGGTAGTCCGAGATGCACCAAATTTGCTTTTCTGGTTGACATCAACTGGTTCAAAAGTGCTAACCTGAGCCCTTAT GCAGTCGGAACACGAGAAAATGTGCGCGTGGTGCTCGACTGGAAGTTGGATCGCCAGAGCTATAAGCTGATGCAGAAGACAATTCCTTTGGGAAATCATT CAGCATATCACTGCAAACGGTTGAATGTGACTTCCAAGGAAATTTCTAGGCCTATGCATCTGGTTCAGTGTTCCTGCAAACTTGGGTTCCAAGGAAACCC TTACCTAGAACATGGCTGTCAAGATATCAATGAATGTGAAGATCCTAACAACAATCCTTGCACACAACACAGCGGATCATGCTGGAATATGAAGGGGGGT TATCGATGCTACCATAAAATACATCCCGGTGATCCTGGTCATTCTCAGATGGCCATTTTACTAGGCACGTTGTTGGGTTTAGGGTTGTTATTTCCGATCA CCAGTTGCTGGTGCCTATCGAAAGCATTCAGAAGATGGAAACAGAGAAAGCGGAAGGAGAAGTTCCTCAAGAAAAACGGTGGTCTATTACTTCAAGAGCA ACTAGCTTCCGGAGAAGCAAACGTCGAGAAGGTCAAGATGTTCAGTTCAAGAGAGCTGGAGAAGGCCACAGATCATTACAACATCAACAGACTACTTGGC CAAGGTAGCCAAGGCACGGTGTACAAAGGAATGCTGGCCGATGGAAAGATCGTCGCCGTCAAGAAATCGAAGCTACTAGACGAGGGGAAGCTGAAACAGT TTATCAACGAAGTAGTAATCCTGTCTCAGATCAACCACAGGAATGTGGTCAAGCTGTTAGGTTGCTGCCTTGAGACACAAGTTCCACGGTTGGTCTACGA GTTCATCCCAAATGGCACTCTCTACCATTTCCTTCATCAACAAGATATAATCCTGACGTGGAAAACACGTCTCAGGATTGCCACTGAAGTTGCTGGAGCG CTGTCGTACCTGCATTCAGCTGCTTCCATGCCTGTTTACCATAGAGACATCAAGTCCACCAACATCCTTTTAGATTCCCAATGCAGGGGGAAGATAGCAG ATTTCGGAATCTCGAGGTCGATCACCATCGATCAAACTCACCTCACAACTCAGGTACAGGGGACGTTCGGTTACCTGGATCCTGAATACTACCAGTCGAG CCAGTTCACGGAGAAGAGCGACGTGTACAGCTTCGGGGTGGTGCTCGTGGAGCTGCTGACTCGACAGAAGGCGGTTGGCCGTTCGGTGAAGTCGGGTGAG GTTCGGAGCTTGGTGGGATGTTTTATTGTTGAAATGGAGAGGGATTGTTTGTTGGAAATGATTGATGGAGAGGTAATGAAGGAAGCGAAGACAGATGAGA TCCTGAAAGTGGCAGAATTGGCAAAGAAATGTTTGAGCTTGACTGGGAAGGAAAGGCCAACGATGAAACAAGTGACGAGTGCCCTTGAGAGCATTCAGAA ATTGCAGCTGCAGGAAACTCTTGCTTGGCGTGCTTCTGCGCATTAG
AA sequence Show only first row Show all	>Lus10034085 pacid=23154655 polypeptide=Lus10034085 locus=Lus10034085.g ID=Lus10034085.BGIv1.0 annot-version=v1.0 MAKPGCQSQCGNVQIPFPFGIRPGCYLHKWYEIVCHKNHSTVPNHFVSRPYLNHVQLKVENISVETGTLLVKFPTIANCHDSINRQVNLAGSPFVLSSTR NRLTAVGCGSLAMMSMKSTAVGGCMSFCDMLTRPGDLRNMTCNGISCCQTNIPSNLQVFNATLSYVKNGTIRRRGGSPRCTKFAFLVDINWFKSANLSPY AVGTRENVRVVLDWKLDRQSYKLMQKTIPLGNHSAYHCKRLNVTSKEISRPMHLVQCSCKLGFQGNPYLEHGCQDINECEDPNNNPCTQHSGSCWNMKGG YRCYHKIHPGDPGHSQMAILLGTLLGLGLLFPITSCWCLSKAFRRWKQRKRKEKFLKKNGGLLLQEQLASGEANVEKVKMFSSRELEKATDHYNINRLLG QGSQGTVYKGMLADGKIVAVKKSKLLDEGKLKQFINEVVILSQINHRNVVKLLGCCLETQVPRLVYEFIPNGTLYHFLHQQDIILTWKTRLRIATEVAGA LSYLHSAASMPVYHRDIKSTNILLDSQCRGKIADFGISRSITIDQTHLTTQVQGTFGYLDPEYYQSSQFTEKSDVYSFGVVLVELLTRQKAVGRSVKSGE VRSLVGCFIVEMERDCLLEMIDGEVMKEAKTDEILKVAELAKKCLSLTGKERPTMKQVTSALESIQKLQLQETLAWRASAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10034085 [exp]	0	1
					Lus10022054 [exp]	5.5	0.5945
					Lus10022056 [exp]	9.0	0.6457
AT2G44210			Protein of Unknown Function (D...		Lus10007458 [exp]	19.3	0.5202
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Lus10008916 [exp]	20.9	0.5317
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10038946 [exp]	21.3	0.5373
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10010207 [exp]	48.2	0.4766
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	63.6	0.4899
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10014199 [exp]	78.5	0.4773
AT2G33280			Major facilitator superfamily ...		Lus10004407 [exp]	86.9	0.4342
AT5G20260			Exostosin family protein (.1)		Lus10027707 [exp]	91.5	0.4637

Compare expression of checked genes

Lus10034085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.