Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31290 559 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 201 / 2e-60 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 146 / 2e-39 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 145 / 4e-39 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 145 / 2e-38 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 137 / 4e-36 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 134 / 4e-35 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 131 / 4e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 124 / 5e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G45790 123 / 5e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003062 [exp] 821 / 0 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10003059 [exp] 346 / 1e-119 AT2G31290 258 / 1e-85 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000098 [exp] 204 / 2e-61 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000096 [exp] 200 / 1e-59 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 176 / 1e-49 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 145 / 4e-39 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 142 / 9e-38 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005755 [exp] 140 / 4e-37 AT4G33495 608 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10027440 [exp] 140 / 5e-37 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191100 [exp] 642 / 0 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 203 / 4e-61 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 169 / 1e-47 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 144 / 3e-38 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 142 / 6e-38 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 143 / 1e-37 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 141 / 3e-37 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 135 / 3e-35 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G245100 [exp] 133 / 5e-35 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 132 / 3e-34 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10034086 pacid=23154752 polypeptide=Lus10034086 locus=Lus10034086.g ID=Lus10034086.BGIv1.0 annot-version=v1.0 ATGCTAGCCAATCGCAGTACTAAGCGTAACTCTTTACCTTCGCTGCTCCATCACTTTCGTGCTTTTTCTCTCTGGTCTATGAAGAAGGATCCTGATCTGG AATCTGCTCTATCTCGAAACCGTAGATGGATAGTCAACAATCAAATCAAGAACATTATTCTTAGATGTCCAGATCAGGTTGCCCCTATCAAACACCTACA GAAAAAGTTTAGAACTCTTGATCTTCAAGGCAAAGCCCTCAATTGGCTGAAGAAATACCCCTGTTGTTTCGAGGTATATCTACAGAATAACGAATACTAC TGTCGGTTAACTAAGCGGATGCTTTCATTAGTCGAGGAGGAAGATTCCGTTAAAGAAATGCAGGAGCCTGTTTATGCAGAGCGGCTGGCCAAGTTGTTGA TGCTGACGAATAACCAAAGGCTCAATGTTGTCAAACTCGGCGAGCTGAAACGAAACTTGGGATTTCCGGATGATTATATTATCAGAATTCTCCCGAAATA TCCTGACATGTTTCGACTTGTCAACCATACCGGGAGAAGGAGTTCGATGGAGATCAAACTTCTATCGTGGAACTCGGACTTTGCAGTCTCTGCTGTGGAA GAAGCATCCAGTGACCGCTGCCGCCCTTGTTTCTCGTGTTCATTGCCTTCTTCTTGGGTTCAATCATGGGAGAGATTCCATGAATTCAATGCAATCCCAT ATGTATCACCTTACGTTCGTTCGAGGGGTTTACTCGAAGGCTCTAAAGAGTCGGAGAAACGAACGGTGGGGTTAGTACACGAACTGCTGTCGTTAACATT GTGGAAGAAGATGTCAATTGTTAAGCTTGGCCACTTCAAAAAGGAGTTTAATCTACCAGAGAAGTTGAATGTTTTGCTCTTGAAGCATCCTGGCATATTC TATGTTTCCAATAGGTACCAGATTTACACAGTTCTTCTAAGGGAAGCGTATAATGGATCGGAACTCAAAGAGATGGATGATCCTCTTCTTATTGTTAAGG GGAAATTTGGGGAGTTGATGCAAGAAGGACTTCATGAATATAACCAGCGGCACCATTTAATGAATTTGGAGAAACAAAAGAAGAAATGTATCTTTCCTGC AAGGTCTGGGAAACAGAAGGATGGAAGAAGCATCGAAATGTCAGAACAAGATGATAATGGTGATAAGCTGGGTGGTTTGTTTAACCATGAGGAAAGGAAA AGGTTCTATAAGGTTCTCTTTGACGATGCTGGCCCATGA
AA sequence Show only first row Show all	>Lus10034086 pacid=23154752 polypeptide=Lus10034086 locus=Lus10034086.g ID=Lus10034086.BGIv1.0 annot-version=v1.0 MLANRSTKRNSLPSLLHHFRAFSLWSMKKDPDLESALSRNRRWIVNNQIKNIILRCPDQVAPIKHLQKKFRTLDLQGKALNWLKKYPCCFEVYLQNNEYY CRLTKRMLSLVEEEDSVKEMQEPVYAERLAKLLMLTNNQRLNVVKLGELKRNLGFPDDYIIRILPKYPDMFRLVNHTGRRSSMEIKLLSWNSDFAVSAVE EASSDRCRPCFSCSLPSSWVQSWERFHEFNAIPYVSPYVRSRGLLEGSKESEKRTVGLVHELLSLTLWKKMSIVKLGHFKKEFNLPEKLNVLLLKHPGIF YVSNRYQIYTVLLREAYNGSELKEMDDPLLIVKGKFGELMQEGLHEYNQRHHLMNLEKQKKKCIFPARSGKQKDGRSIEMSEQDDNGDKLGGLFNHEERK RFYKVLFDDAGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	0	1
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	1.4	0.7738
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	6.2	0.7518
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003062 [exp]	8.1	0.7765
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039451 [exp]	14.1	0.7124
AT3G50430			unknown protein		Lus10022468 [exp]	25.0	0.7465
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	28.0	0.7396
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	29.7	0.6467
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	29.9	0.6551
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027543 [exp]	32.6	0.6823
AT2G18850			SET domain-containing protein ...		Lus10025463 [exp]	35.5	0.6325

Compare expression of checked genes

Lus10034086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.