Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15900 480 / 8e-169 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 482 / 6e-168 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 308 / 3e-101 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT3G02440 301 / 3e-99 TBL20 TRICHOME BIREFRINGENCE-LIKE 20 (.1) AT4G01080 301 / 2e-98 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT4G23790 298 / 4e-97 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 295 / 1e-95 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT4G11090 285 / 3e-92 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT1G70230 281 / 4e-91 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G25360 239 / 3e-73 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003061 [exp] 793 / 0 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10024167 [exp] 399 / 4e-137 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10005952 [exp] 330 / 9e-111 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10029454 [exp] 328 / 4e-109 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10032367 [exp] 301 / 6e-98 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10039438 [exp] 299 / 8e-98 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10010704 [exp] 299 / 2e-97 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10039476 [exp] 298 / 2e-97 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10033950 [exp] 298 / 1e-96 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105700 [exp] 609 / 0 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G110200 [exp] 434 / 2e-150 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 433 / 3e-150 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 427 / 4e-148 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 337 / 1e-112 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.014G095800 [exp] 335 / 9e-112 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.002G168400 [exp] 334 / 3e-111 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 326 / 9e-108 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 322 / 5e-106 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.011G144100 [exp] 305 / 3e-100 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10034087 pacid=23154818 polypeptide=Lus10034087 locus=Lus10034087.g ID=Lus10034087.BGIv1.0 annot-version=v1.0 ATGGAGTTGAAGAAGCCACAAACAACAAGGCTAATCCTCCTCCTCTTCACCTTAACCATCACTCTCTTGTGTAACATCTTCCCCATTACTTACCGCTCTA TCGCCTTCCGCCATGTCAGCTTGGTCCCTGCATACTTCTTCTCCATGAACCCAACACCAGCATCCTTACTACAGCACCCTGATGCTGATGCTGATGCTGA AGCTAATGTTGATGCTGAATGTGATTTATCCAAAGGGGAATGGGTGCCGAACTATGACGCCCCTTACTACACAAACACAACCTGCTGGGCTATACATGAG CACCAGAACTGCATCAAGTACGGCCGCCCTGACGACGGGTTCATGAAGTGGAGGTGGAAGCCCGACGGGTGCGAATTACCCGTGTTCAACCCGGCTCAGT TTCTGGAGATTGTGAGGGGGAAATCCTTGGCCTTTGTTGGTGATTCTGTTGGCAGGAACCAAATGCAATCCTTGATTTGCTTGCTCTCGCGGGTGACTTA CCCAGTAGATGTTTCCAGCACAGCAGATGAAAACTTCAAGCGTTGGAATTACCCATCTCACAATTTCACCATTGCCTCATTTTGGGCACCTCACTTGGTC AAAGCTGAGCAAGAAGAACCCCCCAGTGGCCTCTTCAGCCTTTACCTCGACGAGTTCAACTCAGACTGGACAAGCCAGATCCACGAATTCGACTACGTAA TCATCAATGCTGGCCACTGGTTCTACCGTCCAGCGGTGTACTACGAGAACAGAAAAGTTGTTGGCTGCCGGTTTTGTCAGCTCGAGAATGTGACCGATCT GCCTTCGAGTTACGGCCTCATGAAGGCCTTCAGGACAGCTTTTAAAGCCATCAACAGCTTGGAAGGGTACAAGGGCATAACGTACCTCCGGACATTTTCG CCATCACATTTCGAGAACGGAGAGTGGAACGAAGGGGGTGACTGTGCTAGAACAAGGCCTTTCAGACGCAACGAGACGATGCTGAAAGGGATTCACTTTG AGCTGTACATGGCACAGATGGAAGAGTTCAGGAAAGCTGAGAGACAAGGGAAGAGTAAGGGCTTGAACTTTAGGCTGCTGGACACAACACAAGCGATGCT TTTGCGGCCAGATGGGCATCCCAGCAGATATGGACACCCCCTGAATGCAAATGTGACACTCTACAACGACTGTGTACATTGGTGCCTGCCTGGACCGGTC GATACATGGAACGACTTCTTGCTCCAGATGTTGAAGATGGAAGGCGGCAAAAGATCCTTTCAGGAGAGACTGCATTCAAGTGATAGAAAAATGAGGTTCA GATAA
AA sequence Show only first row Show all	>Lus10034087 pacid=23154818 polypeptide=Lus10034087 locus=Lus10034087.g ID=Lus10034087.BGIv1.0 annot-version=v1.0 MELKKPQTTRLILLLFTLTITLLCNIFPITYRSIAFRHVSLVPAYFFSMNPTPASLLQHPDADADAEANVDAECDLSKGEWVPNYDAPYYTNTTCWAIHE HQNCIKYGRPDDGFMKWRWKPDGCELPVFNPAQFLEIVRGKSLAFVGDSVGRNQMQSLICLLSRVTYPVDVSSTADENFKRWNYPSHNFTIASFWAPHLV KAEQEEPPSGLFSLYLDEFNSDWTSQIHEFDYVIINAGHWFYRPAVYYENRKVVGCRFCQLENVTDLPSSYGLMKAFRTAFKAINSLEGYKGITYLRTFS PSHFENGEWNEGGDCARTRPFRRNETMLKGIHFELYMAQMEEFRKAERQGKSKGLNFRLLDTTQAMLLRPDGHPSRYGHPLNANVTLYNDCVHWCLPGPV DTWNDFLLQMLKMEGGKRSFQERLHSSDRKMRFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	0	1
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	1.0	0.9223
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	3.2	0.8579
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	4.2	0.8506
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	5.5	0.8401
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	5.9	0.8450
AT1G58170			Disease resistance-responsive ...		Lus10016237 [exp]	7.5	0.7633
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	8.0	0.8480
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	9.4	0.8333
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	9.5	0.8247
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	14.0	0.8356

Compare expression of checked genes

Lus10034087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.