Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67180 251 / 1e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT4G02110 90 / 2e-18 transcription coactivators (.1) AT1G77320 54 / 3e-07 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT1G76410 44 / 7e-05 ATL8 RING/U-box superfamily protein (.1) AT3G05250 45 / 0.0001 RING/U-box superfamily protein (.1) AT3G05670 45 / 0.0001 RING/U-box protein (.1) AT2G42030 45 / 0.0001 RING/U-box superfamily protein (.1) AT1G74990 42 / 0.0002 RING/U-box superfamily protein (.1) AT4G38140 42 / 0.0002 RING/U-box superfamily protein (.1) AT3G03550 43 / 0.0004 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010017 [exp] 86 / 6e-17 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10001455 [exp] 67 / 3e-11 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10025038 [exp] 56 / 8e-08 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10000854 [exp] 55 / 2e-07 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10028677 [exp] 54 / 5e-07 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10015213 [exp] 51 / 3e-06 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 45 / 0.0001 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10023162 [exp] 45 / 0.0002 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10036034 [exp] 43 / 0.0003 AT5G19430 231 / 7e-76 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106000 [exp] 338 / 3e-109 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.002G197400 [exp] 79 / 5e-15 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.014G122400 [exp] 79 / 5e-15 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.005G182500 [exp] 56 / 9e-08 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.005G035600 [exp] 47 / 2e-05 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.013G011400 [exp] 47 / 5e-05 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 47 / 6e-05 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.009G070600 [exp] 45 / 7e-05 AT5G19430 224 / 2e-73 RING/U-box superfamily protein (.1.2) Potri.010G235200 [exp] 45 / 8e-05 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G086601 [exp] 44 / 0.0001 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034088 pacid=23154796 polypeptide=Lus10034088 locus=Lus10034088.g ID=Lus10034088.BGIv1.0 annot-version=v1.0 ATGTATTCTACAATTCCAGGTATGGAGACTGTGGTAGCTAGTGTGAGTGGCTACCATGGATCTGAGAGGTTCAAGCTTATCAAATTAATATCTCGGACTG GTGCAAGTTATGTGGGTACTATGTCTAGATCTATTACACACTTGGTTTGCTGGAAATTTGAAGGAGAGAAATATGTCCTTGCCAAGAAATTTAGAGTAAA GGTAGTTAATCATCAGTGGGTAGAAGATTGTATAAAGCAAGGACGGCTCATACCAGAAGGTCCTTATATGTTGCAGAGTGGAAGAGAGGTTGGGCCTCTA TCATTGCAAGATCCTATATCTGATAAGCTTCCTTTGAACAAGAATGGTAAAGTTTTGTCTGATATCTCTAACATACGGGATGAGTTTAGATCTAAGAGGG ATTCTGAAGATACTGCCTTTGTTTCTGGCAGCGATCCAGTCTTTCTGAATAAGGATTTGTTTTCTGGAGCTGGGGAAAACAAGGATATTCCACGTAAGTC AAAGCTTAGAAAGGTGGGGGGATCTTCAAATCAACAAGACCGTTCAAGAAGCAGAAAACGGTTGCAAGATCCTCCTTTCGGGCTACCTCCATTTCGAGAT GAAGATTCAAGCCCTAGCTGTTCTCTGGAGTCAAGGAGAGGGAAGAGGATGGTTCTAGAGCATGAGGAGTTGCAGACTCATCATGTGACACAATCTTTTA AAGGAAAAAGAAATAGTTCTGATGATTTAGGAGTCATTTCTATGATTGAATCTTCTCAAAAGGGAAGGAGACGTCTGAAGAAATACGACTTCAGAAAGAA TATGGAAACTATAATCCTGGACTCTGATGAAGAGAGCTGTCCTGTTCAGCCTCATGGCAATATCAATATTGCTGCACCTGCATATACCTGTTCAGGAAGT AATCTGTGTGTTAACCAATCCGAAAATGAAGGCACGTCTTATAATAATTCCAATGGCCCCGTTGATGATACGGAGCATGTTCGAGATGAGAACAATGACT TTGCTTCGATCAGATCAACTAGTTGTCCTGAGTCAACAACACCTTTAGGGAGCCCAAGCGAGCACCCTCCCCTGGAAAACTCAAATATGAAAACGAATGA TGTGGATCAATTGGCAGCTTCAACCAGAGTAGAGGCTTCAGCTGAATTGTCGTGTGTTATATGCTTGATTGAATTTAGTGCAACTAGAGGGGTTTTGCAA TGTGGCCATCGATTTTGCTACTCATGCATCTTGGATTGGGCTCGCTATCTGGATTCAATTAGGAAACCCTCAACATGCCCCTTATGCAAGGAGATCTTTG TCAAAATTATGAAGGTGGAAGATGCAGACTGTTCTGATCAGAAAATTTACTCCCAAACCATTCCTAGCTGTGCTTTTCTTACTCAAGGAGGGGGAAGGCA ACGATTCGGTACAAATCCATTCCTTTCGTCTACATATGAGCTGACAATGGGAGAGGAAAGACAGAGGTATATGACGTTTACAGTTTTATTTGATCACACT TTTTTTTCTTGGAACAGTCGTGGCGAAGCTGCTGGGGCTGTACAAAATGCCGGGTACGGGAGCCTGAAGATCTTCTGGTCAAGTGTCACGAATGTGAGAT TCGGGTTGTTCATTCCTACTGCCTTGATCCTTATGTGGTGCCATGGACATGTCCTCACTGCAGAGATCTTCATTCCATTCTCCGACGCAGCTTCTAATGG CGCTATTCATTCGCAGACAGAAATCGGACCGGACCAGTCACCGGAGATTTCACCGGAGATTGATAACACACAAGTCCAGTAG
AA sequence Show only first row Show all	>Lus10034088 pacid=23154796 polypeptide=Lus10034088 locus=Lus10034088.g ID=Lus10034088.BGIv1.0 annot-version=v1.0 MYSTIPGMETVVASVSGYHGSERFKLIKLISRTGASYVGTMSRSITHLVCWKFEGEKYVLAKKFRVKVVNHQWVEDCIKQGRLIPEGPYMLQSGREVGPL SLQDPISDKLPLNKNGKVLSDISNIRDEFRSKRDSEDTAFVSGSDPVFLNKDLFSGAGENKDIPRKSKLRKVGGSSNQQDRSRSRKRLQDPPFGLPPFRD EDSSPSCSLESRRGKRMVLEHEELQTHHVTQSFKGKRNSSDDLGVISMIESSQKGRRRLKKYDFRKNMETIILDSDEESCPVQPHGNINIAAPAYTCSGS NLCVNQSENEGTSYNNSNGPVDDTEHVRDENNDFASIRSTSCPESTTPLGSPSEHPPLENSNMKTNDVDQLAASTRVEASAELSCVICLIEFSATRGVLQ CGHRFCYSCILDWARYLDSIRKPSTCPLCKEIFVKIMKVEDADCSDQKIYSQTIPSCAFLTQGGGRQRFGTNPFLSSTYELTMGEERQRYMTFTVLFDHT FFSWNSRGEAAGAVQNAGYGSLKIFWSSVTNVRFGLFIPTALILMWCHGHVLTAEIFIPFSDAASNGAIHSQTEIGPDQSPEISPEIDNTQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67180			zinc finger (C3HC4-type RING f...		Lus10034088 [exp]	0	1
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	4.6	0.9063
AT1G75150			unknown protein		Lus10010814 [exp]	4.9	0.9212
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	4.9	0.9184
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	4.9	0.9198
AT1G04030			unknown protein		Lus10029611 [exp]	5.5	0.9143
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10000740 [exp]	5.8	0.8743
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	7.9	0.9225
AT1G69400			Transducin/WD40 repeat-like su...		Lus10014343 [exp]	11.2	0.8931
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	11.6	0.8790
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	11.8	0.8782

Compare expression of checked genes

Lus10034088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.