Plant FIBer expression Database

Lus10034089 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G30841 814 / 0 Cofactor-independent phosphoglycerate mutase (.1)
AT4G09520 804 / 0 Cofactor-independent phosphoglycerate mutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003060
[exp]
978 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G106200
[exp]
868 / 0 AT3G30841 823 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Potri.017G109500
[exp]
863 / 0 AT3G30841 803 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01676 Metalloenzyme Metalloenzyme superfamily
CL0088 PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Representative CDS sequence
>Lus10034089 pacid=23154660 polypeptide=Lus10034089 locus=Lus10034089.g ID=Lus10034089.BGIv1.0 annot-version=v1.0
ATGGGTAGTCCCCAGCAACCAAAGAGGAGAATTGTGTTTGTGCTGATTGACGGGATAGGTGACGTTTCACTGCCGAGGTTGGGTTACAAGACTCCGTTGG
AAGCAGCCCATGTTCCTAACTTGGATGCTATAGCATCGGCTGGAGTTAATGGTCTTATGGATCCTGTTGAAGTTGGCCTTGGTTGCGGAAGTGACACTGC
TCACCTTTCCTTGATGGGTTATGATCCACGAGTGTATTACAGGGGTCGAGGTGCATTTGAGTCTATGGGTGCTGGTTTGGCAATGTCACCTGGTGATATC
GCATTTAAGTCAAACTTTGCAACATTGGACGAGAAATCTGGAATTGTTACGAGTAGAAGAGCTGACAGACACTTTGAGGAAGAAGGCCCAATTCTGTGTA
AAGCGCTGGATGGAATGAAGTTGCCTTCTTTTCCTGAGTATGAAGTTAGAGTGAGATATGCCACAGAACATAGATGTGGAGTTGTTGTCAAAGGACCAAA
GTTAAGTGGAAACATATCAGGAACTGACCCACTGAAGGACAACCGCTTACTTCTAAAGGCTGAAGCTTTAGACCGTACCGATGAGGCCAGACATACAGCT
GTGGTTGTTAATGAATTATCAAGGGAGATCTCGAAAATATTATCTTCCCACCCAGTGAATGCCAAACGAGCTTCAGAGGGGAAGAACATAGCTAATGTCG
TCCTGTTAAGAGGATGTGGTATCCGAATTCAGGTTCCTTCATTCGAACAGAAACATGGCTTGTGGCCATGCATGGTGGCTCCAACTAAAATCATAGCTGG
TTTGGGCATGTCATTAGATATTGATATCCTGGAAGCTCCTGGGGCAACTGGAGATTATAGAACACTGTTAACTTCCAAAGCAACAGCTATAGCCAACGCT
CTCTCTGCTCCAGTTAGTTCCACTCCTAATGTATTTGTACCTGGAGAGGATGAGCAAAAGGCAGGCCGATCCGATGGGTACGATTTTGGGTTTCTGCACG
TAAAGGCAATAGATGATGCAGGACATGATAAAGCTAGCATTTTCAAAGTGAAAGGAATGGAAGCTGTGGATAAAGCAATTGGGCAGCTGGCCAAGCTGCT
TTGGGAAGCAGAATCTACCGGGAAATTCGAATACTACCTTTGCGTCACAGGAGATCACTCAACACCAGTTGAATACGGAGATCATAGTTTCGAACCCGTT
CCGTTTGCCATCTGTAGGCTGAAGGACTTCGTCGGTGCTAAAGGTGGGGAATCCAACGTTATGGAAGCTTGCCTCGACTCATTTCCTCTTCCAACGGTGA
ACAAAGATGAGGAATATAAGGATTCACAGGAAGATGGAAGTCAAGAACATCTGGAAAAGGCTTTCGGTGGCGATTCTGTTTGTGAATACAGCGAGATAGC
AGCAGCAAGGGGATGCCTTGGTCGATTTCCCGGTGGAGAAATGATGGGCATCATAAAGGCGTTTCTGAAACTAAACTCATGA
AA sequence
>Lus10034089 pacid=23154660 polypeptide=Lus10034089 locus=Lus10034089.g ID=Lus10034089.BGIv1.0 annot-version=v1.0
MGSPQQPKRRIVFVLIDGIGDVSLPRLGYKTPLEAAHVPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLMGYDPRVYYRGRGAFESMGAGLAMSPGDI
AFKSNFATLDEKSGIVTSRRADRHFEEEGPILCKALDGMKLPSFPEYEVRVRYATEHRCGVVVKGPKLSGNISGTDPLKDNRLLLKAEALDRTDEARHTA
VVVNELSREISKILSSHPVNAKRASEGKNIANVVLLRGCGIRIQVPSFEQKHGLWPCMVAPTKIIAGLGMSLDIDILEAPGATGDYRTLLTSKATAIANA
LSAPVSSTPNVFVPGEDEQKAGRSDGYDFGFLHVKAIDDAGHDKASIFKVKGMEAVDKAIGQLAKLLWEAESTGKFEYYLCVTGDHSTPVEYGDHSFEPV
PFAICRLKDFVGAKGGESNVMEACLDSFPLPTVNKDEEYKDSQEDGSQEHLEKAFGGDSVCEYSEIAAARGCLGRFPGGEMMGIIKAFLKLNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G30841 Cofactor-independent phosphogl... Lus10034089
[exp]
0 1
AT5G51350 MORE LATERAL GR... MORE LATERAL GROWTH1, Leucine-... Lus10036321
[exp]
3.2 0.8690
AT5G62940 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BI... Lus10002381
[exp]
4.5 0.8681
AT1G69160 unknown protein Lus10036813
[exp]
4.6 0.8555
AT5G06850 C2 calcium/lipid-binding plant... Lus10023823
[exp]
11.8 0.8546
AT1G64620 DOF AtDof1,8 Dof-type zinc finger DNA-bindi... Lus10023032
[exp]
12.6 0.8318
AT5G06850 C2 calcium/lipid-binding plant... Lus10021030
[exp]
13.6 0.8368
AT2G33470 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFE... Lus10021169
[exp]
14.4 0.8139
AT2G03500 GARP Homeodomain-like superfamily p... Lus10019452
[exp]
16.6 0.8540
AT5G51350 MORE LATERAL GR... MORE LATERAL GROWTH1, Leucine-... Lus10019067
[exp]
17.7 0.8115
AT5G20070 ATNUDX19, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Lus10014493
[exp]
19.8 0.8279

Lus10034089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.