Plant FIBer expression Database

Lus10034090 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16020 358 / 1e-114 GEX3 gamete-expressed 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003058
[exp]
858 / 0 AT5G16020 506 / 2e-172 gamete-expressed 3 (.1)
Lus10017838
[exp]
462 / 3e-159 AT5G16020 201 / 3e-59 gamete-expressed 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G104500
[exp]
506 / 2e-171 AT5G16020 518 / 2e-176 gamete-expressed 3 (.1)
PFAM info
Representative CDS sequence
>Lus10034090 pacid=23154645 polypeptide=Lus10034090 locus=Lus10034090.g ID=Lus10034090.BGIv1.0 annot-version=v1.0
ATGGAAGGAATTCTTCAGGATTATGAATCAGCTCCGATCAGTTGCTGTGGCCATCTCGCGTCTCTTCTTCCTTACGGCCACCGTCGACATCACTTTCTCA
ATGGCGGTTTTTGTAAAAAGAGGTGGCAGTTACTACTCGGAACGGTTTCTTACCAAATCCCCATTTCAAATATTCATCGTTGCCGCCACTATTTTACTCG
AACAAAAAACAGAGCAGTTACCCGGAAACCAACATCAAGCACCACTGAGATGCCAGTCCAGTCGATCTTCGTCTTCCTTGTGATGCTTTCATTTGCATCC
GCAAAACTCAATACTCCTTCCCCAGGTCAGCCAAGAACTGCTTCGAGACAACTTTCGAAGCCTCTAATCGGAGACGACGGAAGGATCTATACATGTTCCG
ACAGATTCTTGTATGCATTCCGAAGCAACGGCTCGATTGAATGGACCTTGCATTTGGGTTCTGATTGCAATCTCAGCATGGCCCCTGTCCATGGCAGACC
AGGACTGGCAAGTGATAGAGTTTCCAAGATCGATTTCCAGCACATTGGGACATCTGTTCCTGCTGAGAAAGTCTTATTCGGACAGGAGGGTGCAGGTGAG
ATAGTTGGTATTGCAAGCACATTGAGTTCTTCGGTGTTCATCAATGTCGAGAATCGAGGGCTGTTTGCATACAGCATCATCAATGGGAAACTACTGTGGA
GTGCTGGCCCTATGCTTTTCCAGTATGGCTACTGTTTAGGTTGCAGAGAAGGAGTTGAAAACTGTTATTTCGCTTCAGTGCCTGTGATTGATCAATGTGA
AACTACCTTGTATATTTCGAATATGAAAGGAGAAGTCTATTCGTTGTCTCTTCACGATCCGTGGCTCAACTGGGTCCAGGATCTGAGCTTCCTTGATGAA
GCATTCACCATTACTCCAGGCAACAATGGACGTTTGTATGTCACCATACCTGTCAAGGCAATTTTATTGGCGCTGGACGTCTTCACTGGGAGCATCCTTT
GGCAGCAAAGTATTGGACCCTTGAGTGCTCAAGATAGTACACCAGCTGAACATCATTATGTTCAAACTTGCCTTGTTACTTTTCAGTTTGGCTCATTTAG
AATCCAACCGGGTCACGGACAAGCTTTTTTCGTGCCGAATGCAGCTAATTGTACCTTCTTCTTTTCTATGAGCATGACAGGGTGGATATCTATTGGTTCT
CTGGATGGGTTTCTGTACTCCATATCACCTGCAGGAACTGTAAAGAAGTTCGCCAAGGCACCTTCCTCCGATTCCGTGATACAAGTTCGCCCATTTGTTG
ATTGCTCTGGGTATGCAGTTTACATATCACAAGCACAAGTGGAAGGAAAAGCCAACCACTTGATTAGAGACTACAATTATGTAGCAGCAATGAAGCCTAC
TGGTGTAACCTTCACTCTGCTGGTTCCTGCAACTGGGACTGTCTATTGGTCCGAAAGCTACCCTGGGGAATTCTGGTCACCATTTTCCCAAAGTGATCTG
AAAAGGGAACAGAAAGAGCCTGCTATTATTTTTGCTGTTCGAGTCGATTGTCCTGGTTATTCTGGGTGGACTTGTGAGATTCTGCTGCATTTTCTGGAAC
AAGGAAAAGATTCAGGGCCAACACTTGGGAAGTTTTCTCCACAAAAGGGTAAGCATTTCATACATCTAATTCAACCAGAAAGCTCTAAGCTGTTATTCTG
TCCGGAGCAGACACTGATCCGGTCCGGTGTTTTAATTTTGCAGAGGTCTCTTCAGCAGAAGAAGAAAGCGTTGGACAGAATAATCACTGAACTGCACCAA
AAAGCTACAGAAGAGGAAGAGACAGGGCACCAAGCCATGGAAGAAATCGGCGACCTTCTGCGTAAAAGAGATAATCTGGAGAGGAAACTTGCAACAACAT
ACAGCTTGGGGAGAGACGATAGTGGACGAATGTCAATTGAAAGTTCGAAGAACCCGAAAACTTCGCTTCCAACAACGTACAATGGAGGAGCAGCAAGGAG
TTACTCCTTCCAGAGTGGAAAGAACGAGAGTGTCACCATCTTTCATGCTGCAACGTAA
AA sequence
>Lus10034090 pacid=23154645 polypeptide=Lus10034090 locus=Lus10034090.g ID=Lus10034090.BGIv1.0 annot-version=v1.0
MEGILQDYESAPISCCGHLASLLPYGHRRHHFLNGGFCKKRWQLLLGTVSYQIPISNIHRCRHYFTRTKNRAVTRKPTSSTTEMPVQSIFVFLVMLSFAS
AKLNTPSPGQPRTASRQLSKPLIGDDGRIYTCSDRFLYAFRSNGSIEWTLHLGSDCNLSMAPVHGRPGLASDRVSKIDFQHIGTSVPAEKVLFGQEGAGE
IVGIASTLSSSVFINVENRGLFAYSIINGKLLWSAGPMLFQYGYCLGCREGVENCYFASVPVIDQCETTLYISNMKGEVYSLSLHDPWLNWVQDLSFLDE
AFTITPGNNGRLYVTIPVKAILLALDVFTGSILWQQSIGPLSAQDSTPAEHHYVQTCLVTFQFGSFRIQPGHGQAFFVPNAANCTFFFSMSMTGWISIGS
LDGFLYSISPAGTVKKFAKAPSSDSVIQVRPFVDCSGYAVYISQAQVEGKANHLIRDYNYVAAMKPTGVTFTLLVPATGTVYWSESYPGEFWSPFSQSDL
KREQKEPAIIFAVRVDCPGYSGWTCEILLHFLEQGKDSGPTLGKFSPQKGKHFIHLIQPESSKLLFCPEQTLIRSGVLILQRSLQQKKKALDRIITELHQ
KATEEEETGHQAMEEIGDLLRKRDNLERKLATTYSLGRDDSGRMSIESSKNPKTSLPTTYNGGAARSYSFQSGKNESVTIFHAAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G16020 GEX3 gamete-expressed 3 (.1) Lus10034090
[exp]
0 1
AT2G45910 U-box domain-containing protei... Lus10014771
[exp]
1.0 0.9023
AT3G58130 N-acetylglucosaminylphosphatid... Lus10034805
[exp]
2.6 0.8643
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Lus10041169
[exp]
2.8 0.8611
AT1G66930 Protein kinase superfamily pro... Lus10008362
[exp]
3.9 0.8696
AT2G33050 AtRLP26 receptor like protein 26 (.1) Lus10019693
[exp]
5.5 0.8646
AT5G37590 Tetratricopeptide repeat (TPR)... Lus10004034
[exp]
6.0 0.8485
AT3G13040 GARP myb-like HTH transcriptional r... Lus10040583
[exp]
6.3 0.8577
AT5G27530 Pectin lyase-like superfamily ... Lus10036205
[exp]
6.7 0.8579
AT2G17280 Phosphoglycerate mutase family... Lus10001381
[exp]
6.9 0.8318
AT5G10530 Concanavalin A-like lectin pro... Lus10020447
[exp]
7.3 0.8844

Lus10034090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.