Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15880 302 / 2e-101 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003057 [exp] 522 / 0 AT5G15880 380 / 3e-132 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110300 [exp] 384 / 2e-133 AT5G15880 364 / 1e-125 unknown protein Potri.004G105400 [exp] 374 / 9e-130 AT5G15880 387 / 2e-134 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034091 pacid=23154852 polypeptide=Lus10034091 locus=Lus10034091.g ID=Lus10034091.BGIv1.0 annot-version=v1.0 ATGGCGGGACTACTAGCGTGGGCGGCGGATGTGGTACGTGGCCACGGCGATGAATCCGATCACATTCCGATCCTCTTCACGGAAGAGCAGCACAAGTATG TTGGAGAACTAGATCGCAAGGCGGCTTCTCTCACCCGTACGATCCAAGATCTGCGCCAGAGATTGCCTCCTCCTGACATCTCCCAACGCCTCCCTCACCT TCTCGCCCACTCCCTCGCTTCCAACGCTGCTCTCGCTCTCCAGCTGAACGCTCACTCCGCCACCAAAGAGCAGACCCAGTTGCGTGAAGTGACCTTGCAG GAAGAAAATGCTGCGTACGAGAGAGCTATCTCAAATTGTGAAAATAAGATACAAGAGAAAATGCAGGAAGCTGATTTACTTCAAATGAAGCTGCAGGAAA TTGACGATACAGAGAACAATTTGAGAGAGCAAATGAAATATTTAGAGGCTGACAAAGTTGGCGTGTCTGGAGAATCTAGTGACTTAGTTCTATCGGAAAA GGTGGTAACACAAGGTCTAGATGCAGAAGCTGCAAACGTTTCCATACTTGAGAAGTTGGAGGCCAAGAAAAAAGAACTGAGTTCGATGGAAGAAATCGTT CATGATTTAGAACGAAAGTGGGTGCAGATTCAGGATAAAGCATTAAAACAGCCTACACCAGCTCAGAGGGAGAAGACACTGGATAAACAACTTCACAGTT TAATTGAACAACTTGAAGGAAAACAGTCACAAGCAGAAAGCCTGGTGAGTGAAATCCATATCAAGGAGATGGAGCTGGAAAGGCTGAACGGGTTGTGGAA GCAGCTGGAGAGCATCAGCAATGCCGAATCCAATGCTGCTAGGAACCGTTACGGAAGGAGCAGCTCATTGAACATGTCCAGTTCTTTAGATTATACGTAC GACAAGCTTCCTCAGTCCACTGGTGGTCGGACCGAGCACCAAGAGCGGCTTGTGTTAATGAGGTCGGCTTTCGTTATCTACATTCTATTCTTGCACATAA TAGTGTTCATCAAGCTTTCGTTTTGA
AA sequence Show only first row Show all	>Lus10034091 pacid=23154852 polypeptide=Lus10034091 locus=Lus10034091.g ID=Lus10034091.BGIv1.0 annot-version=v1.0 MAGLLAWAADVVRGHGDESDHIPILFTEEQHKYVGELDRKAASLTRTIQDLRQRLPPPDISQRLPHLLAHSLASNAALALQLNAHSATKEQTQLREVTLQ EENAAYERAISNCENKIQEKMQEADLLQMKLQEIDDTENNLREQMKYLEADKVGVSGESSDLVLSEKVVTQGLDAEAANVSILEKLEAKKKELSSMEEIV HDLERKWVQIQDKALKQPTPAQREKTLDKQLHSLIEQLEGKQSQAESLVSEIHIKEMELERLNGLWKQLESISNAESNAARNRYGRSSSLNMSSSLDYTY DKLPQSTGGRTEHQERLVLMRSAFVIYILFLHIIVFIKLSF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15880			unknown protein		Lus10034091 [exp]	0	1
AT5G18610			Protein kinase superfamily pro...		Lus10040350 [exp]	1.4	0.8129
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	4.2	0.8034
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10027672 [exp]	5.7	0.7705
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	6.9	0.7927
AT4G14230			CBS domain-containing protein ...		Lus10034024 [exp]	7.4	0.7606
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	11.4	0.7627
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	11.7	0.7787
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Lus10035159 [exp]	15.0	0.7830
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	15.0	0.7466
AT3G49720			unknown protein		Lus10039648 [exp]	20.3	0.7733

Compare expression of checked genes

Lus10034091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.