Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 478 / 1e-165 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 473 / 9e-164 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003051 [exp] 870 / 0 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1) Lus10034095 [exp] 721 / 0 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1) Lus10005114 [exp] 649 / 0 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1) Lus10003053 [exp] 504 / 1e-177 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1) Lus10003052 [exp] 91 / 1e-22 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109300 [exp] 534 / 0 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1) Potri.004G106400 [exp] 533 / 0 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [flax] [poplar] FAD_oxidored PF01619 [flax] [poplar] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034094 pacid=23154729 polypeptide=Lus10034094 locus=Lus10034094.g ID=Lus10034094.BGIv1.0 annot-version=v1.0 ATGGCCACCACTCCCCCCCCCCCCCCCACCACCAAATTCCTCCTCCGTCACAGCGCCGTCGTCAGGCACCTCAACTCCTCCCCTTCGTCCTTCTCCGCCG CCGCCCCACCTCTCAGCTTGACCTCCCACGTCGACGTGGACGCCGCCACAACCTTCAGCGGCACTACCGACCCTCTTCCGACGTCATCAACGTCCATCCT ACAACTGGACGATCACCAGGAGCTGTACGGCTCCGTGCCGCTTCAGAAGCTGATCCACGCATCCGCCGTCCTCCACGTGTCGGCGTCGGAGGTGGTGGTG GACGTCGGGTCGAAGGTGCTGACGTCGCGGCTCATGGAAGTGGAAGCGGTGCGGGGGCTGGTGTACGGGGTGGTGAGGCGGACGTTCTACGAGCATTTCT GCGGCGGGGAGACTGCGGCGGCAGCGCGTGAGAAAGTGAGGGAACTGAACGAGTCCGGGTTACGCGCCATGCTGGATTTCGCGGTGGAGTACACTCCCGA CAATGAGGCGTGCGACCGGAACTTGGAAGGGTTCCTTGAGACGGTGGATTCCGCAGCCTCTCTTCCAGCATCTTCGGTGAGTTTCGTACCAGTCAAGATG ACAGCAATTTGCCCACTGACACTACTTGAACGGATCAGCGACTTACTCCGGTGGCAACAACGGCGGCCGTCGAATTTCCACCTCTCTTGGAAACAATCTT CAAATTCCTCATTACCAATCTTCTCAGAGTCGAGCCCATTGTACCATACCCAAAACGAACCAGCTCAACTCACAGAAGAGGAAGAACAAGACCTCGAACT AGCCCACAACAGACTCAACATTCTCTGCCAAAGATGCTCGGAATCGAACATCCCTCTCACCATCGATGCAGAGGACACCAAGCTCCAACCGGCCATCGAT TACTTCACCTACACGGCAGCCGCCATTTACAACACAAAGGACACACCTTTGGTGTACAACACAATCCAGGCTTACTTGAAGGATGCCAAGGAAAGGCTAA TGTTGGCTACAAAGGCTGCTGACAAGATGGGTTTGTCTATGGGGTTCAAGCTTGTCAGAGGGGCTTACATGTCTAGCGAGAGGTTGTTGGCTTCAAAGCT CGGATTCGAGTCCCCTGTCCATGACACGATTCGGGACACACACGATTGTTACAACGATTGCGCGAGGATTATGATTGACCGGATTGGTAATTCTGGTTCG GGCTCGAATGATGGGTTGGTTTTGGCCACGCATAATGTCGAATCCGCGAGGCTGGCGGCTACGAGGGCCAGAGAGATGGGGATAATGGGGATGGAGGAGA AGAGGCTGGAATTTGCGCAGCTTTACGGGATGGGGGAATCGCTTTCGATGGGGCTGAAGAACGCCGGGTTTCGAGTTAGCAAGTACATGCCGTTTGGACC GATTGACATAGTGATGCCTTATTTGGTTAGGAGGGCTGAAGAGAACAGAGGAATGCTCTCTGCTTCTAGTCTTGACAGAGACCTCATCAGAAAGGAGTTG AATAGAAGGATGAAAGGTGCGATCTTGGGCAAGCTGAATTGA
AA sequence Show only first row Show all	>Lus10034094 pacid=23154729 polypeptide=Lus10034094 locus=Lus10034094.g ID=Lus10034094.BGIv1.0 annot-version=v1.0 MATTPPPPPTTKFLLRHSAVVRHLNSSPSSFSAAAPPLSLTSHVDVDAATTFSGTTDPLPTSSTSILQLDDHQELYGSVPLQKLIHASAVLHVSASEVVV DVGSKVLTSRLMEVEAVRGLVYGVVRRTFYEHFCGGETAAAAREKVRELNESGLRAMLDFAVEYTPDNEACDRNLEGFLETVDSAASLPASSVSFVPVKM TAICPLTLLERISDLLRWQQRRPSNFHLSWKQSSNSSLPIFSESSPLYHTQNEPAQLTEEEEQDLELAHNRLNILCQRCSESNIPLTIDAEDTKLQPAID YFTYTAAAIYNTKDTPLVYNTIQAYLKDAKERLMLATKAADKMGLSMGFKLVRGAYMSSERLLASKLGFESPVHDTIRDTHDCYNDCARIMIDRIGNSGS GSNDGLVLATHNVESARLAATRAREMGIMGMEEKRLEFAQLYGMGESLSMGLKNAGFRVSKYMPFGPIDIVMPYLVRRAEENRGMLSASSLDRDLIRKEL NRRMKGAILGKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	0	1
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10016974 [exp]	4.6	0.9477
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	5.3	0.9410
AT5G38710			Methylenetetrahydrofolate redu...		Lus10003051 [exp]	7.6	0.9429
AT5G58160			actin binding (.1)		Lus10035830 [exp]	12.5	0.9229
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	14.1	0.9210
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	16.4	0.9410
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	20.5	0.9287
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	21.5	0.9304
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	27.7	0.9312
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	31.0	0.9268

Compare expression of checked genes

Lus10034094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.