Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 438 / 9e-152 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 430 / 3e-148 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003051 [exp] 720 / 0 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1) Lus10034094 [exp] 716 / 0 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1) Lus10005114 [exp] 583 / 0 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1) Lus10003053 [exp] 503 / 8e-179 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1) Lus10003052 [exp] 84 / 2e-20 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106400 [exp] 496 / 3e-174 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1) Potri.017G109300 [exp] 492 / 9e-173 AT5G38710 501 / 3e-175 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [flax] [poplar] FAD_oxidored PF01619 [flax] [poplar] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034095 pacid=23154849 polypeptide=Lus10034095 locus=Lus10034095.g ID=Lus10034095.BGIv1.0 annot-version=v1.0 ATGGGGATGAAAGTGCTGAATTCACGCCTGATGGGCGTGGAAGCGGTGAGGGGGTTGGTGTACGGGGTGGTGAGGCGGACGTTTTACGAGCACTTCTGCG CCGGGGAGACTACGACGGCGGCGCGTGAGAAGGTGAGGGAATTGAACGAGTCCGGGCTACGCGCCATGCTGGATTTCGCGGTGGAATACACGCCTGACAA CGAGGCGTGCGATCGGAATTTGGAAGGGTTTCTTGAAACGGTGGATGCCGCAGCCTCTCTTCCACCTTCCTCGGTGAGTTTCGTGGCCGTGAAGATGACT GCCATTTGCCCACTCACACTACTCGAACGAATCAGCGACTTACTCCGTTGGCAGCAAAGACTATCTTCAGCATCAGCATCAAAGTTCAACCTCCCTTGGA AACAATCTTCAAATTCCTCATTGCCAATCTTCTCAGAATCAAGCCCACTGTACCACACCCAAAGCGAACCAGCTCAACTCACAGAAGAAGAAGAGCAAGA CCTCGAACTAGCCCACAAAAGACTCAACATTCTCTGCCGAAGATGCTCCGGATCGAACCTCCCACTCACCGTGGATGCAGAGGACACCAAGCTCCAACCG GCCATCGATTACTTCACCTACACGGCAGCCGCCATTCACAACACAAAAGACACGCCTTTAGTGTACAACACTATTCAGGCTTATTTGAAAGACGCCAAGG AAAGGCTACTCATGGCTACAAAGGCTGCTGACAAGATGGGTTTGGCTGTGGGGTTCAAGCTTGTCAGAGGGGCTTACATGTCCAGCGAGAGGGTTTTGGC TTCGAAGCTCGGATTCGGGTCCCCTGTGCATGACACGATTCGGGACACTCACGACTGTTACAACAATTGCGCGAGGTTTATGATCGACCGGATTGGTTCT TCGAGTTCTTCGGATGGGTTGGTTCTCGCAACGCATAATGTCGAATCGGGGAGGCTAGCGGCTATTAGGGCCGGAGAGATGGGGTTAATGGGGAAGGAAG AGAAGAGGCTGGAGTTTGCACAGCTTTACGGGATGGGGGAATCTCTGTCGATGGGGCTGAAGAATGCCGGGTTTCGAGTTAGTAAGTATATGCCGTTTGG ACCGATGGATATAGTGATGCCTTATTTGGTCAGGAGGGCTGAAGAGAACAGAGGAATGCTCTCTGCTTCCAGTATTGACAGAGACCTCATCAGAAAGGAG TTGAAGAGAAGGATTAAAGATGGAATCTTGGGGAATTAA
AA sequence Show only first row Show all	>Lus10034095 pacid=23154849 polypeptide=Lus10034095 locus=Lus10034095.g ID=Lus10034095.BGIv1.0 annot-version=v1.0 MGMKVLNSRLMGVEAVRGLVYGVVRRTFYEHFCAGETTTAAREKVRELNESGLRAMLDFAVEYTPDNEACDRNLEGFLETVDAAASLPPSSVSFVAVKMT AICPLTLLERISDLLRWQQRLSSASASKFNLPWKQSSNSSLPIFSESSPLYHTQSEPAQLTEEEEQDLELAHKRLNILCRRCSGSNLPLTVDAEDTKLQP AIDYFTYTAAAIHNTKDTPLVYNTIQAYLKDAKERLLMATKAADKMGLAVGFKLVRGAYMSSERVLASKLGFGSPVHDTIRDTHDCYNNCARFMIDRIGS SSSSDGLVLATHNVESGRLAAIRAGEMGLMGKEEKRLEFAQLYGMGESLSMGLKNAGFRVSKYMPFGPMDIVMPYLVRRAEENRGMLSASSIDRDLIRKE LKRRIKDGILGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	1.0	0.9028
AT3G54000			unknown protein		Lus10016465 [exp]	2.0	0.8576
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	3.5	0.8420
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	4.5	0.8083
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	7.5	0.8477
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10018039 [exp]	8.7	0.7895
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	10.9	0.8116
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	11.2	0.7982
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	13.6	0.8369
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	16.1	0.8397

Compare expression of checked genes

Lus10034095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.