Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19940 567 / 0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003050 [exp] 801 / 0 AT2G19940 560 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145700 [exp] 626 / 0 AT2G19940 618 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01118 [flax] [poplar] Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02774 [flax] [poplar] Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10034096 pacid=23154786 polypeptide=Lus10034096 locus=Lus10034096.g ID=Lus10034096.BGIv1.0 annot-version=v1.0 ATGAATGCTGCTACTTTCAGCTCTATTTCCTGTCATCAAGGATGCAGGTGGAAGGGAGAGGTGAGATTTTTGAAGTCCAACAGCAATAATAGGGATGGCC AGCTCAAAGTGAAAAGACGATCGGCAGTTTCGCCTAGGAGCTTGAATGTATCATGTTCAAATGTGGAGAAAGACGTCCGTGTTGCTATCCTGGGTGCAAG TGGATATACTGGTGCCGAGATAATCCGACTGGTCCAAAATCATCCCTTTGTTGGGATCTCTCTGATGACTGCTGACAGGAATGCTGGCAAATCAATTGGA TCGGTGTTTCCTCACTTGGCTACTCTAAAGGGCTTGCCAACTTTGGTATCCACTAGCGAGGCCGATTTTTCAGACGTGGATGCTGTATTTTGTTGTTTAC CTCATGGAACGACACAGGAAATAATCAAAGGGCTTCCACAAGGTTTAAAAATTGTTGATCTCTCTGCTGACTTTCGACTCCGTAAACTCTCGGATTATGA ACAATGGTATGGCCAACCACATAGAGCACCTGAATTACAGGAAGAAGCCGTGTACGGTTTGACTGAAATTGCCAGAGATGAAATAAAAGCTGCGCGATTG GTTGCTAATCCTGGATGTTATCCCACATCCATTCAACTTCCTCTTGTACCTTTGATCAAGGCTGAACTAATCCGCCATGAGAATATCATCATTGACTCAA AATCTGGAGTTAGTGGAGCAGGACGTAGTGCGAAAGTGAATAACCTCTACTCAGAAGTATCTGAGGGCATAATGTCTTATGGTGTCACTGGACATCGACA TGTTCCCGAAATTGAACAGGGACTATCTGATGCTGCTGGGGGTGATGTAACAGTCAGTTTCACCCCGCACTTAATGCCTATGAGTCGCGGGATGCAATCA ACTATATATGTGGAGATGGCTCCAGGGAAATCTGTTGATGACTTATACGAGCAATTGAAACAGTCTTATGAGGAGGAAGAATTTGTACATGTTTTAGAGA AAGGAGTGATTCCTCGTACTCACGATGTTCAGGGATCAAACTATTGTTATATGAATGTCTTTCCTGATCGAGGTTCCAACAGAGCAAAAATTATATCAGT CATTGACAACTTGGTGAAAGGTGCATCTGGGCAAGCTATACAAAATCTGAACTTGATGATGGGTTTTCCAGAAAATGCTGGACTTGGCTATGTGCCATTG TTTCCTTAA
AA sequence Show only first row Show all	>Lus10034096 pacid=23154786 polypeptide=Lus10034096 locus=Lus10034096.g ID=Lus10034096.BGIv1.0 annot-version=v1.0 MNAATFSSISCHQGCRWKGEVRFLKSNSNNRDGQLKVKRRSAVSPRSLNVSCSNVEKDVRVAILGASGYTGAEIIRLVQNHPFVGISLMTADRNAGKSIG SVFPHLATLKGLPTLVSTSEADFSDVDAVFCCLPHGTTQEIIKGLPQGLKIVDLSADFRLRKLSDYEQWYGQPHRAPELQEEAVYGLTEIARDEIKAARL VANPGCYPTSIQLPLVPLIKAELIRHENIIIDSKSGVSGAGRSAKVNNLYSEVSEGIMSYGVTGHRHVPEIEQGLSDAAGGDVTVSFTPHLMPMSRGMQS TIYVEMAPGKSVDDLYEQLKQSYEEEEFVHVLEKGVIPRTHDVQGSNYCYMNVFPDRGSNRAKIISVIDNLVKGASGQAIQNLNLMMGFPENAGLGYVPL FP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	0	1
AT3G14130			Aldolase-type TIM barrel famil...		Lus10008133 [exp]	1.0	0.8342
AT4G10265			Wound-responsive family protei...		Lus10004297 [exp]	1.4	0.7980
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	4.6	0.7587
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	6.5	0.7203
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	7.3	0.6918
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	13.4	0.7703
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	13.6	0.7622
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10026343 [exp]	17.3	0.6958
AT3G09010			Protein kinase superfamily pro...		Lus10005856 [exp]	17.7	0.7455
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	19.9	0.7228

Compare expression of checked genes

Lus10034096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.