Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 368 / 8e-129 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 360 / 5e-126 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 359 / 2e-125 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 351 / 3e-122 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 348 / 3e-121 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 347 / 4e-121 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57540 330 / 4e-114 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 329 / 1e-113 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G25820 327 / 1e-112 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G48070 320 / 6e-110 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003048 [exp] 552 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 531 / 0 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 517 / 0 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 513 / 0 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 511 / 0 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 508 / 0 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 431 / 1e-153 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 430 / 1e-153 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 430 / 2e-153 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 427 / 3e-152 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 424 / 4e-151 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 417 / 2e-148 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 395 / 7e-140 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G236200 [exp] 384 / 2e-135 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.014G146100 [exp] 383 / 7e-135 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 376 / 4e-132 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.013G005700 [exp] 360 / 3e-125 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 355 / 6e-124 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 352 / 1e-122 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10034098 pacid=23154693 polypeptide=Lus10034098 locus=Lus10034098.g ID=Lus10034098.BGIv1.0 annot-version=v1.0 ATGGCGACAACTCTGCCTCTGGTGATGCTACTAGTGATGGCGTTGAGTACTCATCTAATGCCAATCTCGAATGCCAACTTCCACCAGCATTTTGATGTCA CTTGGGGGCATCACCATGCTCAGATCACCAACGGCGGGCAGCAACTCGCCCTCTCCCTCGACAAGGATTCGGGCGCTGGCTTCAAATCCAAGAACGAGTA TCTCTTTGGCCGTATCGATATGCAACTCAAGCTCATCGCTGGCAATTCTGCTGGGAGTGTCACCACCTTTTACTTGTCGTCGGAAGAAGGACCGAATCAC GACGAAATCGACTTCGAGTTTCTTGGCAATTCCAGTGGTAATCCTTACACTCTGCACACCAATGTGTTTAGTCAAGGAAAAGGCAACCGAGAGCAACAAT TTCATCTCTGGTTCGACCCAACTGCGGCTTTCCACACCTACACCATCCTTTGGAATTCCCAAAGAATCATATTCTTAGTGGACAACATACCAATCAGGGT GTTCAACAACTTGGAATCAATGGGGGTTCCATTCCCAAGCAAGAAGCCGATGAGCATTCACTCGAGCTTATGGAACGCCGATGACTGGGCCACCCAAGGC GGAAGAGTCAAGGCCGATTGGACCAACGCTCCATTCGTCGCTTCTTACAGAAACTTCAAGGCAGAAGCTTGCGTCTGGTTGCCGTCCTCGGCCTCGTCAG CCTGCTCTCCGGGAGGATGGCAGACTCAGGGGATTGATGCCGCCGGCCGGAACAGGATCCGGTGGGTGCAGAGCAAATATATGATCTACAATTACTGCAC TGACTTCCAACGGTTTCCTCAGGGTGTCCCTGTTGAATGCAAGCAGTCCCGATTCCTTTGA
AA sequence Show only first row Show all	>Lus10034098 pacid=23154693 polypeptide=Lus10034098 locus=Lus10034098.g ID=Lus10034098.BGIv1.0 annot-version=v1.0 MATTLPLVMLLVMALSTHLMPISNANFHQHFDVTWGHHHAQITNGGQQLALSLDKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSEEGPNH DEIDFEFLGNSSGNPYTLHTNVFSQGKGNREQQFHLWFDPTAAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPSKKPMSIHSSLWNADDWATQG GRVKADWTNAPFVASYRNFKAEACVWLPSSASSACSPGGWQTQGIDAAGRNRIRWVQSKYMIYNYCTDFQRFPQGVPVECKQSRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10034098 [exp]	0	1
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Lus10003740 [exp]	2.0	0.8290
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	3.5	0.8140
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	4.6	0.8050
AT5G38700			unknown protein		Lus10010019 [exp]	8.5	0.7633
AT4G00770			unknown protein		Lus10009318 [exp]	9.4	0.7099
AT1G03230			Eukaryotic aspartyl protease f...		Lus10000080 [exp]	9.5	0.7906
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	11.8	0.6944
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	16.5	0.7142
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	17.0	0.7996
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004611 [exp]	18.2	0.6542

Compare expression of checked genes

Lus10034098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.