Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02460 575 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 567 / 0 PAM1 plant adhesion molecule 1 (.1) AT3G07890 134 / 2e-35 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 122 / 4e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 99 / 3e-22 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 90 / 2e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 89 / 3e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT1G04830 65 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G13730 62 / 3e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT5G52580 57 / 8e-09 RabGAP/TBC domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003047 [exp] 722 / 0 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 141 / 5e-38 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 140 / 7e-38 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 107 / 8e-25 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10040349 [exp] 99 / 2e-22 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 97 / 1e-21 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 97 / 1e-21 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 80 / 4e-16 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 77 / 1e-15 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106700 [exp] 601 / 0 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 576 / 0 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.014G163400 [exp] 141 / 3e-38 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 140 / 8e-38 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 127 / 1e-31 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.008G046600 [exp] 109 / 8e-26 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.010G215000 [exp] 105 / 2e-24 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G134200 [exp] 79 / 7e-16 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 71 / 4e-13 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 67 / 5e-12 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10034099 pacid=23154872 polypeptide=Lus10034099 locus=Lus10034099.g ID=Lus10034099.BGIv1.0 annot-version=v1.0 ATGCTATATGTGTTCTTTGAAACTAATCACCACTCCCTTGAGGAAGAGCTGATCGCTTCCCGGATCGGAGATCTAGAGAAAAGAGCAGATGACCATGAAG CAGGGCCAAATCCTTCACCACGATTCATTGACAGATTTAGCTGTCTAAAGCAAGATGCTTGCCATTCTCCTGAAGGCTCGAGCAAGGCAAGTGAAGAAAG AAGGATCAGGAAATGGAGGAAGATGATTGGGGTCGGAGGAAGTGACTGGAAACACTATGTGAGGAGGAAGCCTCATGTAGTTAAGAGGCGTATTAGGAAA GGAATCCCTGACTGTTTAAGGGGTGTTGTTTGGCAGTTGATTTCTGGAAGCAGAGATCTTCTGCTGATGAATCCTGGGGTGTATGAGCAACTAGTTATAT ATGAGACGTCAGCATCTGAACTGGACATAATTCGTGATATATCTCGGACTTTTCCTTCACACGTCTTCTTCCAGCAGAGACATGGTCCAGGCCAGAGGTC TCTTTACAATGTATTGAAGGCATATTCTGTGTATGATAGAGATGTGGGATATGTTCAGGGAATGGGCTTTGTAGCTGGTTTGTTGCTTCTTTATATGAGT GAAGAAGATGCCTTCTGGTTGTTGGTTGCGTTGCTCAAAGGTGCTGTCCATGCTCCGATGGAAGGGTTGTATCAGGTGGGGCTGCCTCTTGTACAGCAGT ATCTGTTTCAGTTTGAGAATTTGGTGAAAGAGCATTTGCCCAAACTTGGACAGCATTTTTCCACAGAAATGATAAATCCTAGCATGTATGCTAGTCAGTG GTTTATTACTGTCTTCTCATACTCATTCCCATTTCACTTGGCGCTCCGAATCTGGGATGTCTTTCTGCACGAGGGTGTAAAAATTGTTTTCAAAGTAGGA TTGGCTCTGTTGAAATATTGCCATGATGACTTGGTCAAACTTCCATTTGAGAAGCTAATGCAAGCTTTCCGTAATTTCCCTGAGGATGCCATGAATCCAG ATGTTTTGCTGCCAATGGCGTACTCCATAAAGGTATCAGGTCGATTGATAGAGCTGAAGCACGAGTATGACAAGAACAATGTGAAGGTGCTTCAGTCCTC AGAGCGTGAAAATGGGATCAAAGAAGCTGATGCAATGAAGTGA
AA sequence Show only first row Show all	>Lus10034099 pacid=23154872 polypeptide=Lus10034099 locus=Lus10034099.g ID=Lus10034099.BGIv1.0 annot-version=v1.0 MLYVFFETNHHSLEEELIASRIGDLEKRADDHEAGPNPSPRFIDRFSCLKQDACHSPEGSSKASEERRIRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRK GIPDCLRGVVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFVAGLLLLYMS EEDAFWLLVALLKGAVHAPMEGLYQVGLPLVQQYLFQFENLVKEHLPKLGQHFSTEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLHEGVKIVFKVG LALLKYCHDDLVKLPFEKLMQAFRNFPEDAMNPDVLLPMAYSIKVSGRLIELKHEYDKNNVKVLQSSERENGIKEADAMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	0	1
AT1G10660			unknown protein		Lus10009991 [exp]	2.8	0.8074
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	3.5	0.7968
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	6.9	0.8164
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	12.3	0.7913
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	13.5	0.8151
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	15.2	0.7643
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	16.1	0.7546
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	17.1	0.7717
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	17.5	0.7811
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	17.8	0.7451

Compare expression of checked genes

Lus10034099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.