Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003044 [exp] 152 / 4e-48 AT5G38790 57 / 6e-11 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034101 pacid=23154638 polypeptide=Lus10034101 locus=Lus10034101.g ID=Lus10034101.BGIv1.0 annot-version=v1.0 ATGGATCCATACAAACAATATGGATATTCAGAAGGATGCAGCAGCAGTGAATCAGGGTGGACTACTTACATAGCTTCTCCCATGGAGGAAGATGGGAGTG ATGAACATGGTGATGCTGCTGCTGCTGCTGCTGCTGCATATGCCAATGGTGGATACTGCAGTGGCAATTACAGGGACATCATTGCTGCAAATGTCGGCGA AGCAGACAGTGACGATTCGATGGCCTCAGATGCGTCCTCAGGACCTTGCTACCATCAATCCAACGGCCAGAATGCTCGTCATCAGGGTAATTTGAAGCAG CAACATCATGAAAAGGGCAGGAAGAGCATCAGCAGCAGCTTCAGCCAATTCCTGTCTGGGATAAAATCCAACAGCAGCAAGGACAAGAAGAAGAGTGAAG CAGACAGGAAGCTACCTGCAGGTGGTAGCAGAAAACGTTGGAAATAG
AA sequence Show only first row Show all	>Lus10034101 pacid=23154638 polypeptide=Lus10034101 locus=Lus10034101.g ID=Lus10034101.BGIv1.0 annot-version=v1.0 MDPYKQYGYSEGCSSSESGWTTYIASPMEEDGSDEHGDAAAAAAAAYANGGYCSGNYRDIIAANVGEADSDDSMASDASSGPCYHQSNGQNARHQGNLKQ QHHEKGRKSISSSFSQFLSGIKSNSSKDKKKSEADRKLPAGGSRKRWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38790			unknown protein		Lus10034101 [exp]	0	1
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	1.4	0.8757
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	5.7	0.8497
AT2G37195			unknown protein		Lus10019937 [exp]	6.0	0.8655
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	8.7	0.7841
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10016055 [exp]	10.8	0.8298
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	13.6	0.7845
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	14.7	0.7708
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	15.0	0.8202
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	19.0	0.7846
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	19.3	0.7853

Compare expression of checked genes

Lus10034101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.