Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02360 897 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT5G41670 763 / 0 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 761 / 0 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 49 / 6e-06 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 47 / 1e-05 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 42 / 0.001 GR2, GLYR2 glyoxylate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003043 [exp] 997 / 0 AT3G02360 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10024725 [exp] 756 / 0 AT5G41670 896 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10032341 [exp] 754 / 0 AT5G41670 893 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10029098 [exp] 79 / 8e-18 AT3G02360 85 / 2e-20 6-phosphogluconate dehydrogenase family protein (.1.2) Lus10012301 [exp] 52 / 5e-07 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10001349 [exp] 50 / 3e-06 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108920 [exp] 907 / 0 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 907 / 0 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 892 / 0 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.008G113700 [exp] 884 / 0 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 750 / 0 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 748 / 0 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.014G197900 [exp] 54 / 7e-08 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G211500 [exp] 44 / 0.0002 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 42 / 0.001 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00393 [flax] [poplar] 6PGD 6-phosphogluconate dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034102 pacid=23154867 polypeptide=Lus10034102 locus=Lus10034102.g ID=Lus10034102.BGIv1.0 annot-version=v1.0 ATGGCTGCGAAACCAAGAATCGGACTTGCTGGTTTGGCGGTTATGGGTCAGAACCTCGCTCTCAACATTGCAGAGAAAGGATTCCCCATTTCTGTCTACA ATCGATCCACCTCCAAGGTTGACGAGACTGTCGAGAGAGCCAAAAGGGAGGGTGATCTCCCGGTTCTCGGATTCCACGATCCTGAATCGTTCGTTCAGTC GATTCAGAAGCCTCGTGTGATAATCATGCTAGTTAAGGCTGGAGCACCCGTCGATGCCACTATTCAGACTCTTTCTGCCTACATGGAGAAAGGTGACTGC ATTATTGATGGTGGGAATGAGTGGTATGAGAACACCGAGAGGAGGCAAAAGGCGATGCTAGAGAAGGGTTTACTATATCTCGGAATGGGAGTTTCGGGTG GCGAGGAAGGTGCACGAAACGGCCCCTCGATGATGCCTGGAGGTTCCCTGGAGGTGTATAAGTACATTGAAGACATTCTTCTGAAAGTGGCAGCTCAAGT TCCCGACAGTGGCCCATGTGTAACATACATCGGAGAAGGTGGATCCGGTAACTTTGTAAAGATGGTCCACAATGGAATCGAATACGGTGATATGCAGCTG ATTGCTGAAGCTTATGATGTGCTGAAGTCAGTGGGAAAGCTTTCCAACGAGGAGTTGCATAACGTTTTTACAGAATGGAACAAGGGCGAGCTACTGAGCT TCCTAATTGAAATAACTGCTGATATTTTTGGAATTAAAGACGACAAGGGAGAGGGATATTTGGTTGATAAGGTCCTGGACAAAACCGGTATGAAGGGTAC CGGTAAATGGACGGTGCAGCAAGCTGCTGATCTTTCCGTGGCAGCTCCCACAATTGCTGCTTCGTTGGATGCCAGGTTTCTTAGTGGTCTGAAGGAGGAA AGGGTTCAAGCTGCCGAGGTGTTCAAGTCTGGTGGTTTCTCGGATATTCTCACTGACCAAGTTGTGGACAAGGAGACGTTGATTGATGATGTGAGGAAAG CACTTTATGCATCCAAGATTTGCAGTTATGCACAGGGAATGAACATGATTCGCGCCAAGAGTATCGAGAAAGGATGGGGATTGGTGTTGGGAGAGTTGGC TAGGATTTGGAAAGGAGGCTGCATTATCCGAGCTGTGTTCCTGGACAGGATCAAGCAGGCGTATGACCGTAACCCTGAACTGTCTAACCTTCTTGTGGAT CCCGAGTTTGCAAAGGAAATCATCGAGCGCCAGTCTGCATGGCGCAGGGTTGTGTCTCTTGCTGTCAACTCTGGTATTAGTACTCCTGGTATGTCGTCCA GCCTTGCCTATTTCGACACCTACAGGAGAGGAAGGTTGCCTGCTAATCTGGTGCAAGCTCAAAGGGATTACTTTGGTGCTCATACTTATGAAAGAACTGA TATGGAAGGAGCTTTCCATACCGAGTGGTTCAAGATTGCCCGGCAATCGAAGTACTAG
AA sequence Show only first row Show all	>Lus10034102 pacid=23154867 polypeptide=Lus10034102 locus=Lus10034102.g ID=Lus10034102.BGIv1.0 annot-version=v1.0 MAAKPRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETVERAKREGDLPVLGFHDPESFVQSIQKPRVIIMLVKAGAPVDATIQTLSAYMEKGDC IIDGGNEWYENTERRQKAMLEKGLLYLGMGVSGGEEGARNGPSMMPGGSLEVYKYIEDILLKVAAQVPDSGPCVTYIGEGGSGNFVKMVHNGIEYGDMQL IAEAYDVLKSVGKLSNEELHNVFTEWNKGELLSFLIEITADIFGIKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAASLDARFLSGLKEE RVQAAEVFKSGGFSDILTDQVVDKETLIDDVRKALYASKICSYAQGMNMIRAKSIEKGWGLVLGELARIWKGGCIIRAVFLDRIKQAYDRNPELSNLLVD PEFAKEIIERQSAWRRVVSLAVNSGISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTYERTDMEGAFHTEWFKIARQSKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	0	1
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	1.0	0.8981
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	3.3	0.8618
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	5.5	0.8839
AT1G52330			Late embryogenesis abundant (L...		Lus10011458 [exp]	7.7	0.8800
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	9.3	0.8402
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	13.0	0.8241
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	14.9	0.8583
AT2G43630			unknown protein		Lus10013892 [exp]	17.1	0.8582
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037334 [exp]	18.0	0.8049
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	19.2	0.8687

Compare expression of checked genes

Lus10034102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.