Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68430 68 / 8e-15 unknown protein AT5G16200 59 / 2e-11 50S ribosomal protein-related (.1) AT1G66890 46 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003042 [exp] 216 / 5e-73 AT1G68430 66 / 3e-14 unknown protein Lus10028496 [exp] 58 / 8e-11 AT5G16200 84 / 9e-21 50S ribosomal protein-related (.1) Lus10009148 [exp] 40 / 0.0002 AT5G16200 81 / 2e-19 50S ribosomal protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121300 [exp] 132 / 5e-40 AT1G68430 79 / 5e-19 unknown protein Potri.004G097200 [exp] 86 / 8e-22 AT1G66890 / unknown protein Potri.017G117866 [exp] 84 / 3e-21 AT5G16200 72 / 1e-16 50S ribosomal protein-related (.1) Potri.008G123800 [exp] 63 / 2e-13 AT1G68430 54 / 2e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034103 pacid=23154789 polypeptide=Lus10034103 locus=Lus10034103.g ID=Lus10034103.BGIv1.0 annot-version=v1.0 ATGGCGACGCTTCAGAAGTTCAAACTCCTCGCCACACAATGCGGAGTAGCTGCCAGCCCGACTCGGAGCCCCATGACCAGCCCAGTGGTCCAATTCCCCC GCCGTAAATCGACCCTCCGTATGCTACTCACCAGGAGCTCCGGCCGCCGTTGGAGTAGCAGAGACCACCTCCCTGCACCGCCCCCTCCTCCACAATCGAG ACCGGAGGAGCGGAGCAGGCGAGGCACCCTCAAGGACCTCTTCGTTTCGTCCCCTGCTACTGCTTTTCACGAAGATGAAGAGGAAGATCAGGGGGACAGG GGAAACGACGTCGTCGGAGTGACTTCGAGTTGGATGGCTGAGAAATGTCAAGTGTGGAGAATCAAGAAGGAGGTCGGAGGGCCATCGGTGCCGGGATGGA TTGGGTTCAGGCACCGGGCCATTTTGCGGAAGTCTTGGCGCCCTGTTCTCGTTGGCATTCCTGAGAATGACCATTCCGGTGACTCTGAAACTGATTAG
AA sequence Show only first row Show all	>Lus10034103 pacid=23154789 polypeptide=Lus10034103 locus=Lus10034103.g ID=Lus10034103.BGIv1.0 annot-version=v1.0 MATLQKFKLLATQCGVAASPTRSPMTSPVVQFPRRKSTLRMLLTRSSGRRWSSRDHLPAPPPPPQSRPEERSRRGTLKDLFVSSPATAFHEDEEEDQGDR GNDVVGVTSSWMAEKCQVWRIKKEVGGPSVPGWIGFRHRAILRKSWRPVLVGIPENDHSGDSETD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68430			unknown protein		Lus10034103 [exp]	0	1
AT1G68430			unknown protein		Lus10003042 [exp]	1.0	0.9657
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	1.4	0.9287
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	4.6	0.9233
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	5.7	0.9006
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	5.9	0.9122
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	6.0	0.8999
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	6.0	0.9111
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	7.2	0.9136
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	7.3	0.9096
AT1G69160			unknown protein		Lus10036813 [exp]	8.1	0.8747

Compare expression of checked genes

Lus10034103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.