Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25380 380 / 7e-132 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT2G47490 346 / 2e-119 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT5G66380 158 / 4e-46 ATFOLT1 folate transporter 1 (.1) AT5G48970 116 / 5e-30 Mitochondrial substrate carrier family protein (.1) AT4G01100 111 / 7e-28 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G46800 109 / 1e-27 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT3G53940 106 / 6e-26 Mitochondrial substrate carrier family protein (.1) AT4G32400 106 / 7e-26 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G51870 102 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT1G14140 99 / 1e-23 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003041 [exp] 378 / 2e-133 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 337 / 8e-116 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10032365 [exp] 120 / 3e-31 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 120 / 5e-31 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 119 / 8e-31 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10028339 [exp] 116 / 2e-30 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10032364 [exp] 113 / 2e-28 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10022431 [exp] 108 / 3e-26 AT5G51050 737 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10016736 [exp] 108 / 4e-26 AT5G51050 749 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121500 [exp] 429 / 3e-151 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 409 / 2e-143 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 367 / 1e-127 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 358 / 8e-124 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.007G019000 [exp] 154 / 2e-44 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.014G095400 [exp] 118 / 2e-30 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 114 / 6e-29 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G210000 [exp] 113 / 9e-29 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 113 / 2e-28 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 112 / 2e-28 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10034104 pacid=23154754 polypeptide=Lus10034104 locus=Lus10034104.g ID=Lus10034104.BGIv1.0 annot-version=v1.0 ATGACTGAAGGTGGAGAATCGAGGCACAATCGGACCCGCCGAGAATTAGTATGCCATGCCGGCGCTGGCGCCGCTGCAGGTTCTATTGCAGCGACATTCG TGTGCCCATTGGATGTTATCAAGACAAGATTACAGGTCCATGGATTGCCTATATCAGCACATTCTGCTGGTGGCCGAGGTAGTGCTATTATCGCAATCTT ACAGAACATAGTCAAGACTGATGGTTTTAGGGGTTTATATCGCGGACTCTCACCAACAATATTAGCGATACTTCCCAATTGGGCTGTATATTTCACAGTT TATGAAAAATTGAAAGGCTTGCTTCTTTCAAATGGGGATGGTAGTAGCCAATTAAGTGTTGGTCGAAACATGATAGCTGCTGCTGGGGCTGGGGCTGCCA CTGCCATCAGTACAAATCCATTATGGGTTGTGAAAACTCGGCTCCAAACGCAGGGAATGAGACCGGGTGTGGTTCCATACACAAGCATATTCTCCGCTCT AAGAAGAATAACTCGTGAAGAAGGTCTGCGGGGGCTATATAGTGGTATTCTGCCTTCCTTGGTGGGGATAAGTCATGTTGCGATTCAGTTTCCTGCATAC GAAAAGATCAAGTCTTATATGGCAGATAGGGATAACACAACGGTGGACGAGCTAAGTCCTGGAGAAGTAGCGATCGCTTCGTCAGTAGCTAAAGTTGTAG CTTCCATAACGACTTACCCCCACGAGGTTATACGTTCGCGGCTGCAGGAGCAAGGGCAGGTCAGGGGTGCTCAGGTTAGGTATAACGGTGTTGTTGATTG CGTTAGGAAGGTGTTTTTGAAGGAAGGGATACCAGGATTCTACCGTGGTTGTGCAACTAATTTAATGAGGACTACTCCGTCGGCTGTCATTACGTTTACC AGCTACGAAATGATACATCGAGTACTGGAGCGCCTTGTGCCTGGAAGCATTCATAGCCTCAATGGGAAGACATGA
AA sequence Show only first row Show all	>Lus10034104 pacid=23154754 polypeptide=Lus10034104 locus=Lus10034104.g ID=Lus10034104.BGIv1.0 annot-version=v1.0 MTEGGESRHNRTRRELVCHAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPISAHSAGGRGSAIIAILQNIVKTDGFRGLYRGLSPTILAILPNWAVYFTV YEKLKGLLLSNGDGSSQLSVGRNMIAAAGAGAATAISTNPLWVVKTRLQTQGMRPGVVPYTSIFSALRRITREEGLRGLYSGILPSLVGISHVAIQFPAY EKIKSYMADRDNTTVDELSPGEVAIASSVAKVVASITTYPHEVIRSRLQEQGQVRGAQVRYNGVVDCVRKVFLKEGIPGFYRGCATNLMRTTPSAVITFT SYEMIHRVLERLVPGSIHSLNGKT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10034104 [exp]	0	1
AT5G05280			RING/U-box superfamily protein...		Lus10034228 [exp]	21.5	0.7875
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	29.9	0.7866
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10015059 [exp]	30.8	0.7641
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10009102 [exp]	44.0	0.7460
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10023102 [exp]	49.0	0.7528
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10042112 [exp]	60.0	0.7196
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	80.3	0.7165
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	82.0	0.7085
AT5G38060			unknown protein		Lus10004070 [exp]	83.7	0.7366
					Lus10013331 [exp]	87.9	0.7284

Compare expression of checked genes

Lus10034104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.