Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31860 367 / 4e-126 HISN2, AT-IE HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) AT1G68220 254 / 9e-83 Protein of unknown function (DUF1218) (.1) AT4G27435 133 / 1e-36 Protein of unknown function (DUF1218) (.1) AT1G52910 128 / 8e-35 Protein of unknown function (DUF1218) (.1) AT3G15480 124 / 1e-33 Protein of unknown function (DUF1218) (.1) AT1G13380 124 / 4e-33 Protein of unknown function (DUF1218) (.1) AT1G61065 122 / 1e-32 Protein of unknown function (DUF1218) (.1) AT5G17210 49 / 2e-06 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043484 [exp] 379 / 6e-132 AT1G68220 276 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10043483 [exp] 323 / 9e-110 AT1G31860 232 / 1e-76 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Lus10032662 [exp] 145 / 4e-41 AT3G15480 256 / 3e-88 Protein of unknown function (DUF1218) (.1) Lus10043091 [exp] 145 / 5e-41 AT3G15480 258 / 7e-89 Protein of unknown function (DUF1218) (.1) Lus10034324 [exp] 121 / 6e-32 AT1G13380 275 / 2e-95 Protein of unknown function (DUF1218) (.1) Lus10041447 [exp] 120 / 7e-32 AT1G13380 273 / 1e-94 Protein of unknown function (DUF1218) (.1) Lus10018474 [exp] 113 / 3e-29 AT1G61065 219 / 2e-73 Protein of unknown function (DUF1218) (.1) Lus10032663 [exp] 94 / 2e-22 AT4G27435 103 / 4e-28 Protein of unknown function (DUF1218) (.1) Lus10011208 [exp] 72 / 1e-14 AT1G61065 118 / 3e-34 Protein of unknown function (DUF1218) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G391400 [exp] 365 / 5e-125 AT1G31860 371 / 3e-130 HISTIDINE BIOSYNTHESIS 2, histidine biosynthesis bifunctional protein (HISIE) (.1) Potri.010G120500 [exp] 296 / 3e-99 AT1G68220 284 / 2e-98 Protein of unknown function (DUF1218) (.1) Potri.008G124100 [exp] 285 / 8e-95 AT1G68220 273 / 3e-94 Protein of unknown function (DUF1218) (.1) Potri.001G403600 [exp] 137 / 5e-38 AT4G27435 218 / 3e-73 Protein of unknown function (DUF1218) (.1) Potri.011G122700 [exp] 132 / 4e-36 AT4G27435 213 / 3e-71 Protein of unknown function (DUF1218) (.1) Potri.010G124800 [exp] 124 / 4e-33 AT1G13380 208 / 6e-69 Protein of unknown function (DUF1218) (.1) Potri.008G120900 [exp] 123 / 8e-33 AT1G13380 200 / 9e-66 Protein of unknown function (DUF1218) (.1) Potri.004G038700 [exp] 79 / 3e-17 AT1G61065 205 / 6e-68 Protein of unknown function (DUF1218) (.1) Potri.001G403500 [exp] 73 / 7e-15 AT3G15480 106 / 3e-29 Protein of unknown function (DUF1218) (.1) Potri.019G048300 [exp] 53 / 9e-08 AT5G17210 188 / 1e-60 Protein of unknown function (DUF1218) (.1), Protein of unknown function (DUF1218) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0231 [flax] [poplar] MazG PF01503 [flax] [poplar] PRA-PH Phosphoribosyl-ATP pyrophosphohydrolase CL0231 [flax] [poplar] PF06749 [flax] [poplar] DUF1218 Protein of unknown function (DUF1218) CL0231 [flax] [poplar] PF01502 [flax] [poplar] PRA-CH Phosphoribosyl-AMP cyclohydrolase
Representative CDS sequence Show only first row Show all	>Lus10034105 pacid=23154728 polypeptide=Lus10034105 locus=Lus10034105.g ID=Lus10034105.BGIv1.0 annot-version=v1.0 ATGAAAAGAGTAAAGAAAACAAACATCGCCAAACACAGTGTAGTACTAGCTAGCAGGCAAACAGCAGTGACAGAGATTACTCACAACACAACACAGCAAA GAGCAATAATGGCTGTCTCTATCCCTACTCTAGCTGTCGTCGTCTCTCTTCATCTCATAGCCTTCGTATTCGCCGTCGGCGCTGAACGCCGCCGCAGCAC CGCGACGATTGTGCCAGACAAATACGACGAGTCCACTTTCTGCGTGTACGACACCGACGCTTCCACCGTGTACGGACTGGCTGCGTTTGGGCTGCTGCTG ATTAGCCAGACTGTGGTTCACGGCGTCACCAGATGTCTTTGCTTCGGCAAAGGCCTTGTCACTGGAAGCTCCTCTGCTACCTTTGCAATCTTCCTCTTCG TTTTCTCCTGGCTGTGTTTCCTGGGGGCTGAGGCATGCTTATTAGCTGGGTCGGCTAAGAATGCATACCACACCAAGTATCGGGGATCTTTCGGTGTCAA AGACTTGTCTTGCACTACCCTTCGCAAAGGCGTGTTTGCTGCCGGAGCAGCCTTGACGTTGCTGTCGCTGCTAGGCTCCGTCTTGTATTACTGGGCTCAC TCGAGAGCCGATACTGGTGGGTGGGAGAAGCATAAGAACGAAGGTATTGGCTTGACTCCTTCAGACTATCCACAACAGCAACAACAACCAGCTGGCGAAT TCGGGAAGGTTGAGACTTTGTTAGACAGAATAAAATGGGATGACAAAGGTTTGGCGGTGGCTATAGCACAGAATGTTGACACAGGAGCCATATTAATGCA AGGCTTTGCGAACAGGGATGCTCTAGCTACCACCATTTACTCCCGTAAGGCAACATTTTACAGTCGTTCACGTTCATCGTTATGGACAAAAGGAGAGACA TCCAACAACTTCATCAATATTCATGACATATTTCTTGACTGTGACCGTGACTCTATAATTTATCTTGGGAAACCAGTTGGTCCTTCATGTCACACAGGCT CTGAAACCTGCTACTACACTTCTGTGTTTGACTCTTTGGAAACTGAACAGCCTGAAGTAAATAAGTTGGCGTCAACAAGCTTATACTCATTGGAGTCCAC AATCTCCCAGCGGAAAGCTGAATTAGCTGTAGCAGAAAGCGGGAAACCTTCTTGGACTAAAAGATTATTGCTTAGTCATGACCTGTTGTGCACAAAGATC CGGGAGGAAGCCGATGAACTGTGCCAAACACTAGAGAAGAATGAGGATCAAACACGGGCAGCCTCAGAGATGGGAGATGTGCTGTACCATGCCATGGTAC TGCTGGCACTCAAGGATGTAAAAATGGAAGACGTCCTCGAAATACTTCGTCACAGATTTAGCCAATCTGGCATTGAAGAAAAAGGAAGTCGCGGCAAGCA CTAG
AA sequence Show only first row Show all	>Lus10034105 pacid=23154728 polypeptide=Lus10034105 locus=Lus10034105.g ID=Lus10034105.BGIv1.0 annot-version=v1.0 MKRVKKTNIAKHSVVLASRQTAVTEITHNTTQQRAIMAVSIPTLAVVVSLHLIAFVFAVGAERRRSTATIVPDKYDESTFCVYDTDASTVYGLAAFGLLL ISQTVVHGVTRCLCFGKGLVTGSSSATFAIFLFVFSWLCFLGAEACLLAGSAKNAYHTKYRGSFGVKDLSCTTLRKGVFAAGAALTLLSLLGSVLYYWAH SRADTGGWEKHKNEGIGLTPSDYPQQQQQPAGEFGKVETLLDRIKWDDKGLAVAIAQNVDTGAILMQGFANRDALATTIYSRKATFYSRSRSSLWTKGET SNNFINIHDIFLDCDRDSIIYLGKPVGPSCHTGSETCYYTSVFDSLETEQPEVNKLASTSLYSLESTISQRKAELAVAESGKPSWTKRLLLSHDLLCTKI REEADELCQTLEKNEDQTRAASEMGDVLYHAMVLLALKDVKMEDVLEILRHRFSQSGIEEKGSRGKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	0	1
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	4.5	0.8848
AT1G57610			Protein of unknown function (D...		Lus10019127 [exp]	11.4	0.7899
AT5G10910			mraW methylase family protein ...		Lus10042729 [exp]	14.4	0.8293
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10023884 [exp]	15.9	0.8307
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	16.4	0.8793
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	23.8	0.8126
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	26.2	0.8518
AT4G12060			Double Clp-N motif protein (.1...		Lus10007005 [exp]	26.8	0.8224
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	27.5	0.8292
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10042287 [exp]	31.0	0.8422

Compare expression of checked genes

Lus10034105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.