Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76900 536 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 535 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G43640 518 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 439 / 8e-153 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 380 / 5e-130 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 371 / 4e-126 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 350 / 2e-118 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 337 / 2e-113 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 215 / 6e-66 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 63 / 1e-10 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043482 [exp] 749 / 0 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10028579 [exp] 642 / 0 AT1G25280 597 / 0.0 tubby like protein 10 (.1.2.3) Lus10018884 [exp] 637 / 0 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10029780 [exp] 629 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10042807 [exp] 479 / 6e-159 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 393 / 8e-135 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 381 / 6e-131 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10010833 [exp] 362 / 1e-122 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10033209 [exp] 362 / 2e-122 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192300 [exp] 642 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 637 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 629 / 0 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 398 / 5e-137 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 398 / 8e-137 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.007G023400 [exp] 394 / 6e-135 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G228500 [exp] 385 / 2e-131 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 383 / 1e-130 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.002G034600 [exp] 379 / 3e-129 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 332 / 2e-111 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10034106 pacid=23154673 polypeptide=Lus10034106 locus=Lus10034106.g ID=Lus10034106.BGIv1.0 annot-version=v1.0 ATGTCGTTCCGTAGCATAGTTCGTGACGTCAGAGATGGGTTTGGGAGCTTGTCCCGACGGGGTTTTGACGTGAGGCTTCCGGTTCATCATAGAGGGAAGT CTCATGGCTCTATTACTGACTCACAGGACCAGCTGGTGGTTATCCAGAGCAGTTGTTGGGCTAGCCTTCCTCCTGAGTTACTGCGTGACGTAATCAAGAG ATTGGAGGCTAGTGAAGGCACTTGGCCTGCTCGTAAACATGTTGTTGCTTGCGCTGCAGTTTGCAAAGCGTGGAGAGAAATGTGTAAAGAAATTGTTAGA AGTGCTGAGGTCTCCGGGAAGATTACTTTCCCAATTTCCCTGAAACAGCCTGGTCATCGGGATGGACTCATCCAATGCTTCATTAAGAGAGACAAATCCA AGTTAACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAACGGGAAGTTTCTTCTCTCTGCTAAAAGGACTCGCAGAACTACTTACAC CGAGTGTATAATCTCCATGGACGCTGACAACATATCAAGATCAAGTGGTGCATATATGGGAAAACTGAGATCAAATTTCTTAGGGACCAGATTCATAATC TACGACACTCAGCCACCCTACAACAATGCCCATCTCCCCCCACCTGGTCGAAGCCGGAGATTCTACTCCAAGAAAGTTTCACCAAAGGTCCCAACCGGCA GCTACAACATTGCTCAAATTTCATACGAGCTAAACGTGCTGGGGACAAGGGGTCCCCGAAAAATGCAGTGTACAATGCAATCAATCCCAACCTCATCCCT TCAACCCGGCGGTTCAGTCCCATGCCAACAAGAGATCCTGCCGAACTGCATCGATGAATCGTTCAGAAGCATGTCCTTGTCGAGATCAATCGGCAGCTCG AGCGAGTTCAGCAGCTCCCGATTCTTCGACGTTGGTAGACGCCTAGAACGAGGAGGGGACGGAGAAGAGGAATCTAAAGATCGGCCGCTGATTCTCCGTA ATAAAGCGCCCAGGTGGCATGAGCAGCTGCAATGCTGGTGTCTCAACTTCCGCGGCAGAGTTACAGTAGCCTCTGTCAAAAACTTCCAACTGATAGCTGC AAATCCCCCTACTGCTACCGGTTGCGGACAACCACCCTCTCAGCCGCCGCCAGCTCAGTCGGACCATGATAAGGTGATACTGCAGTTTGGGAAGGTGGGG AAAGATATGTTCACCATGGATTACCGGTACCCTCTGTCTGCATTCCAAGCTTTTGCGATATGCTTGAGCAGTTTTGACACCAAGTTGGCTTGTGAATAG
AA sequence Show only first row Show all	>Lus10034106 pacid=23154673 polypeptide=Lus10034106 locus=Lus10034106.g ID=Lus10034106.BGIv1.0 annot-version=v1.0 MSFRSIVRDVRDGFGSLSRRGFDVRLPVHHRGKSHGSITDSQDQLVVIQSSCWASLPPELLRDVIKRLEASEGTWPARKHVVACAAVCKAWREMCKEIVR SAEVSGKITFPISLKQPGHRDGLIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTECIISMDADNISRSSGAYMGKLRSNFLGTRFII YDTQPPYNNAHLPPPGRSRRFYSKKVSPKVPTGSYNIAQISYELNVLGTRGPRKMQCTMQSIPTSSLQPGGSVPCQQEILPNCIDESFRSMSLSRSIGSS SEFSSSRFFDVGRRLERGGDGEEESKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANPPTATGCGQPPSQPPPAQSDHDKVILQFGKVG KDMFTMDYRYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	7.3	0.8820
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	8.9	0.8732
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10028984 [exp]	9.8	0.8607
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	16.3	0.8303
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10024043 [exp]	23.5	0.8437
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	25.6	0.8591
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	25.7	0.8392
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10032380 [exp]	26.8	0.8200
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	27.1	0.8380
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	28.4	0.8492

Compare expression of checked genes

Lus10034106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.