Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 656 / 0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 306 / 6e-98 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043481 [exp] 893 / 0 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 448 / 8e-156 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10013496 [exp] 269 / 2e-82 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 108 / 1e-19 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119700 [exp] 702 / 0 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 687 / 0 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.012G053700 [exp] 515 / 1e-178 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034107 pacid=23154780 polypeptide=Lus10034107 locus=Lus10034107.g ID=Lus10034107.BGIv1.0 annot-version=v1.0 ATGGCTACGAAATCGACCTTCCATTCCGACATACGCGCCGCTCTAGCTGTCGCCAATTCCCTGTTCGTCAATCCCGATCACCATCATCATCGTCGTCTCT CCTCTCCCCGCCGCTTGTCTTTTTCTCATCCACAGCTCCCTCCATCTTCTTACGTCGCCGCTTATTCACGGCCGCCTTCGCCATCCTCCTCCTCGTCGCT GTTCAGTATTAGAGCTTTCTCTACCGGAACCCCTGAACCAGCTGTCAAACTTCCTCAGAAGCCCTCGATTTGCAGCGCTGATGAGCTTCACTACGTCCCT GTCCCCAATTCCGATTGGCGCCTTGCTCTCTGGCGCTACCACCCTTCCCCTCAGGCTCCTCCAAGGAATCATCCACTGCTACTGTTGTCTGGAGTTGGGA CCAATGCCATTGGTTATGACCTTTCTCCTGGGTCATCATTTGCGAGATACATGTCTGGCCAAGGCTTTGACACATGGATTCTTGAAGTTCGAGGGGCCGG ACTAAGTGTGTGGGAATCAGATTCCAAAAAAGTTGGGCAGTCTGCTTATGCAGCTGCTGAGCAGATGGAATCAGCTGCTAAGAGTGCGACTAATGGAGCT GTGTCTGGAAATCAGAAAACAGAAAGTTCTCAAAACATGTCTACGGAAACTGAGGTTTCATCGGTCCCAGAGGATCCAACTGGACTAGCAACTGTGTGGG ATGAATCGAAGTTGGTGTCAAATTTGACAGATACGTTCATGCGTTTGTCTGAAAGTCTCTCTGGTTTTCTTGGTGAAGGTCAATCCATGATTATGTCTGC GAAATTATTTGACCAGATATCTACACTTTTAGAAGATACCCAGTTATCCGAGCGTCTTAATGAGTTAAGGGAGAAGCTTCTGAGCTTGCTGGAGACGAGG CAAACTTCTGGTGTTACCAGTCAGATCAGAGATCTAAGTCAAAAGCTTGTAAATATTGTTGAGGAGGGGCAACGGTCTGTCTCCCCCCAGTTGTTTGATT TGCAAGAGCGTCTTGCATCAACTATAGAAGATTTTCAGAAACAACTTGACTTGATTGTGAAGTATGACTGGGACTTTGACCATTACCTCGAGGAGGATGT TCCTACTGCGATGCAATATATAACAACACAATGCAAACCAAAGGATGGAAAGTTGCTTGCCATTGGACATTCCATGGGAGGCATCTTACTGTATGCAAGA TTATCACGTTGTGGAGGAGACTCTGGTTTTGCTGCCATTGTTACTCTGGCTTCGTCAATTGACTACACTTCTTCAAATTCAAGGCTCAAATTACTTCTAC CTCTGGCTGATCCTGCTCAGGCTCTGAACGTACCTGTCATTCCTTTGGGAGCATTGCTGGCAGCAGCATATCCTCTTTCATCTCGTCCTCCATATGTGTT ATCTTGGCTCAATCAGTTCATATCAGCACAGGATATGATGCGCCCAGAGCTGCTAGAAAAGCTTGTTTTGAATAACTTTTGTACCATACCAGCCAAACTT CTATTGCAGCTCACAACAGCTTTTCGAGAGGGTGGATTGCGAGACAGGAGTGGCAAAATTTTGTACAAGGACAATTTACGTAATTGCAATATTCCTGTCT TAGCTTTAGCTGGAGATGAAGACATAATTTGCCCGCCAGAGGCTGTTGAAGAAACTGTCAAGGTTCTCCCCAAACATTTGGTCACCTACAAACTTTTCGG AGAATCAGGAGGTCCGCACTATGCGCATTACGATTTGGTCGGAGGACACATGGCAGTGGAGCAAGTTTATCCTGCAATAGTCGACTTTCTTAGCCAGCAT GACTCGGTGTGA
AA sequence Show only first row Show all	>Lus10034107 pacid=23154780 polypeptide=Lus10034107 locus=Lus10034107.g ID=Lus10034107.BGIv1.0 annot-version=v1.0 MATKSTFHSDIRAALAVANSLFVNPDHHHHRRLSSPRRLSFSHPQLPPSSYVAAYSRPPSPSSSSSLFSIRAFSTGTPEPAVKLPQKPSICSADELHYVP VPNSDWRLALWRYHPSPQAPPRNHPLLLLSGVGTNAIGYDLSPGSSFARYMSGQGFDTWILEVRGAGLSVWESDSKKVGQSAYAAAEQMESAAKSATNGA VSGNQKTESSQNMSTETEVSSVPEDPTGLATVWDESKLVSNLTDTFMRLSESLSGFLGEGQSMIMSAKLFDQISTLLEDTQLSERLNELREKLLSLLETR QTSGVTSQIRDLSQKLVNIVEEGQRSVSPQLFDLQERLASTIEDFQKQLDLIVKYDWDFDHYLEEDVPTAMQYITTQCKPKDGKLLAIGHSMGGILLYAR LSRCGGDSGFAAIVTLASSIDYTSSNSRLKLLLPLADPAQALNVPVIPLGALLAAAYPLSSRPPYVLSWLNQFISAQDMMRPELLEKLVLNNFCTIPAKL LLQLTTAFREGGLRDRSGKILYKDNLRNCNIPVLALAGDEDIICPPEAVEETVKVLPKHLVTYKLFGESGGPHYAHYDLVGGHMAVEQVYPAIVDFLSQH DSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	0	1
AT5G18130			unknown protein		Lus10005702 [exp]	2.2	0.8155
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	2.4	0.7616
AT2G47890	CO	COL13	B-box type zinc finger protein...		Lus10005936 [exp]	8.4	0.7663
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	11.2	0.7395
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	11.5	0.7328
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	12.0	0.7174
AT1G13900			Purple acid phosphatases super...		Lus10036894 [exp]	13.0	0.6632
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	15.7	0.7438
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10025794 [exp]	17.6	0.6980
AT5G18130			unknown protein		Lus10020284 [exp]	20.8	0.7338

Compare expression of checked genes

Lus10034107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.